EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_UNCTG (Serine hydroxymethyltransferase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=glyA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 113/224 (50.45%), Postives = 151/224 (67.41%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            Q + +ELI SEN  S SVM+A GS +TNKY+EGYPG RYYGG E +D+AE++  +RA + F         NVQ  SG+ +NF +  ALLKP D IM L L HGGHL+HG        +    +F  + Y ++E TG IDY+++E      +PKLI++GASAY+R++D+ERI  +  K  A  ++DMAH +GLVAAG+ PSP  YAD+ TTTTHK+LRGPRG +I
Sbjct:   22 QRETIELIASENIASQSVMEAQGSCLTNKYAEGYPGKRYYGGCEVVDIAETIAIERAKKLFNAR----FANVQPHSGAQANFAILLALLKPGDTIMGLSLSHGGHLTHG-----SPFNVSGKWFNVISYSVSEKTGCIDYNEIESLVLEHKPKLIISGASAYSRIWDWERISGIAKKVSAYHMSDMAHYAGLVAAGIYPSPVGYADITTTTTHKTLRGPRGGLI 236          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_SODGM (Serine hydroxymethyltransferase OS=Sodalis glossinidius (strain morsitans) GN=glyA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 120/259 (46.33%), Postives = 163/259 (62.93%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA   F  D      NVQ  SGS +NF VYT LL+P D ++ ++L HGGHL+HG       ++     +  +PY ++ES G+IDYDQL + A   +PK+I+ G SAY+ + D+ R+R++ +   A +  DMAH++GL+AAGV P+P  +A VVTTTTHK+L GPRG +I  + G EE          + KK  S+      GGP
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKALFGADY----ANVQPHSGSQANFAVYTTLLQPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGIDES-GHIDYDQLAELAKTHQPKMIIGGFSAYSGVVDWARMRQIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEE----------LYKKLNSAVFPGAQGGP 264          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_PORGI (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis GN=glyA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 111/228 (48.68%), Postives = 154/228 (67.54%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q KG+ELI SENF S  VMQA+GS MTNKY+EGYPG RYYGG E +D +E +   R  + +  +   W  NVQ  SG+ +N  V  A L+  D  M L+L HGGHLSHG       +++  I +  + Y L+E TG +DYD +EK A   +PKLI+ G SAY+R +DY+R+R++ +K  A+++ DMAH +GL+AAG++ +P +YA +VT+TTHK+LRGPRG +I   K
Sbjct:   18 QLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLYGAE---WA-NVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSHG-----SLVNSSGILYRPIGYNLSEETGMVDYDHMEKMAIEHKPKLIIGGGSAYSREWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGIILMGK 236          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_PORG3 (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=glyA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 111/228 (48.68%), Postives = 154/228 (67.54%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q KG+ELI SENF S  VMQA+GS MTNKY+EGYPG RYYGG E +D +E +   R  + +  +   W  NVQ  SG+ +N  V  A L+  D  M L+L HGGHLSHG       +++  I +  + Y L+E TG +DYD +EK A   +PKLI+ G SAY+R +DY+R+R++ +K  A+++ DMAH +GL+AAG++ +P +YA +VT+TTHK+LRGPRG +I   K
Sbjct:   18 QLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLYGAE---WA-NVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSHG-----SLVNSSGILYRPIGYNLSEETGMVDYDHMEKMAIEHKPKLIIGGGSAYSREWDYKRMREIADKVGALLMIDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGIILMGK 236          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_GEOUR (Serine hydroxymethyltransferase OS=Geobacter uraniireducens (strain Rf4) GN=glyA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 115/231 (49.78%), Postives = 152/231 (65.80%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            T  Q   LELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG   +D+ E+L  +RA E F  +      NVQ  SGS +N  VY  +LKP D ++ ++L HGGHL+HG       ++    FF  +PY +      IDYD++E+     +PK+IV GASAY R+ D+   RKV +K  A+++ DMAHI+GLVAAG+ PSP  +A+ VTTTTHK+LRGPRG MI  R+
Sbjct:   19 TERQEYNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHNVDIVENLAIERAKELFGAEH----ANVQPHSGSQANMAVYFTVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKFFNIVPYGVTRENQTIDYDEVERLTLEHKPKMIVVGASAYPRIIDFAAFRKVADKVGAVVMVDMAHIAGLVAAGLHPSPVPHAEFVTTTTHKTLRGPRGGMILCRE 240          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_DEHSC (Serine hydroxymethyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=glyA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 114/224 (50.89%), Postives = 147/224 (65.62%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            ++LI SEN+TS +V++A GSV TNKY+EGYPG RYY G EY D  E L   RA   F  +      NVQ  SG+ +N   Y A++KP D IM L L HGGHL+HG      K++     +  + Y LN  T  IDYD LEK A   RP++IV GASAY R+ D+ER R +C+K  A ++ D+AHI+GLVAAG+ PSP  YADVVT+T+HK+LRGPRG  I  ++
Sbjct:   26 IDLIASENYTSKAVLEAQGSVFTNKYAEGYPGKRYYAGCEYADAVEELAIDRAKTLFHAEH----ANVQPHSGAQANMAAYFAMVKPGDTIMGLTLSHGGHLTHG-----SKVNFTGKLYHVIEYGLNAETERIDYDNLEKLAMEHRPRMIVTGASAYPRILDFERFRAICDKVDAKLMVDIAHIAGLVAAGLHPSPVPYADVVTSTSHKTLRGPRGGFILCKE 240          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_DEHSB (Serine hydroxymethyltransferase OS=Dehalococcoides sp. (strain BAV1) GN=glyA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 114/224 (50.89%), Postives = 147/224 (65.62%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            ++LI SEN+TS +V++A GSV TNKY+EGYPG RYY G EY D  E L   RA   F  +      NVQ  SG+ +N   Y A++KP D IM L L HGGHL+HG      K++     +  + Y LN  T  IDYD LEK A   RP++IV GASAY R+ D+ER R +C+K  A ++ D+AHI+GLVAAG+ PSP  YADVVT+T+HK+LRGPRG  I  ++
Sbjct:   26 IDLIASENYTSKAVLEAQGSVFTNKYAEGYPGKRYYAGCEYADAVEELAIDRAKTLFHAEH----ANVQPHSGAQANMAAYFAMVKPGDTIMGLTLSHGGHLTHG-----SKVNFTGKLYHVIEYGLNAETERIDYDNLEKLAMEHRPRMIVTGASAYPRILDFERFRAICDKVDAKLMVDIAHIAGLVAAGLHPSPVPYADVVTSTSHKTLRGPRGGFILCKE 240          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ANASP (Serine hydroxymethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glyA PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 112/223 (50.22%), Postives = 150/223 (67.26%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR 692
            LELI SENFTS +V+ A GSV+TNKY+EG PG RYYGG E+ID  E +   RA + F  D      NVQ  SG+ +NF V+  LLKP D+IM +DL HGGHL+HG       ++    +F+   Y +++ T  +DYDQ+ + A   RPKL++ G SAY R+ D+E+ R + ++  A +LAD+AHI+GLVA G+ P+P  Y DVVTTTTHK+LRGPRG +I  R
Sbjct:   31 LELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDKIEQIAIDRAKQLFGADH----ANVQPHSGAQANFAVFLTLLKPGDKIMGMDLSHGGHLTHG-----SPVNVSGKWFQVCHYGVSQQTEQLDYDQIRELALRERPKLLICGYSAYPRIIDFEKFRSIADEVGAYLLADIAHIAGLVATGLHPNPLPYCDVVTTTTHKTLRGPRGGLILTR 244          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEF5 (Serine hydroxymethyltransferase 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.842e-57
Identity = 121/259 (46.72%), Postives = 164/259 (63.32%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            Q + +ELI SEN+TS +VM+A GSV+TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL+  D I+ + L HGGHL+HG       +S+    +  + Y + ++ G IDYD++E+ A   +PK+IVAG SAY+++ D+ R R++ +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  R   +           I KK  S+      GGP
Sbjct:   26 QEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHAGSQANAAVYLALLQGGDTILGMSLAHGGHLTHG-----AAVSSSGKLYNAIQYGI-DANGLIDYDEVERLAVEHKPKMIVAGFSAYSQILDFPRFREIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILARANAD-----------IEKKLNSAVFPGAQGGP 263          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_PETMO (Serine hydroxymethyltransferase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=glyA PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.155e-56
Identity = 112/221 (50.68%), Postives = 151/221 (68.33%), Query Frame = 3
Query:   21 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            GLELI SEN+ S SVM+A GS+ TNKY+EGYP  RYYGG EYID  E+L + RA E F         NVQ  SGS +N   Y AL+KP D +M + L HGGHL+HG       ++   + F  + Y ++E T  I+YD++E+ A   +PK+IVAG SAY+R+ D++R R++ ++  A ++ DMAH +GLVAAG+ P+P EYA VVT+TTHK+LRGPRG +I
Sbjct:   26 GLELIASENYASKSVMEAAGSIFTNKYAEGYPKRRYYGGCEYIDEVETLARDRAKELFNAK----FANVQPHSGSQANMGAYLALMKPGDTLMGMSLSHGGHLTHG-----APVNFSGMLFNVVSYGVDEETETINYDEVERIAKDAKPKVIVAGGSAYSRIIDFKRFREIADEVGAYLMVDMAHFAGLVAAGIHPNPVEYAHVVTSTTHKTLRGPRGGII 237          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_UNCTG8.842e-5750.45Serine hydroxymethyltransferase OS=Uncultured term... [more]
GLYA_SODGM8.842e-5746.33Serine hydroxymethyltransferase OS=Sodalis glossin... [more]
GLYA_PORGI8.842e-5748.68Serine hydroxymethyltransferase OS=Porphyromonas g... [more]
GLYA_PORG38.842e-5748.68Serine hydroxymethyltransferase OS=Porphyromonas g... [more]
GLYA_GEOUR8.842e-5749.78Serine hydroxymethyltransferase OS=Geobacter urani... [more]
GLYA_DEHSC8.842e-5750.89Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_DEHSB8.842e-5750.89Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_ANASP8.842e-5750.22Serine hydroxymethyltransferase OS=Anabaena sp. (s... [more]
GLYA1_PSEF58.842e-5746.72Serine hydroxymethyltransferase 1 OS=Pseudomonas f... [more]
GLYA_PETMO1.155e-5650.68Serine hydroxymethyltransferase OS=Petrotoga mobil... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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