EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEPF (Serine hydroxymethyltransferase 2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.573e-56
Identity = 120/259 (46.33%), Postives = 162/259 (62.55%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            Q + +ELI SEN+TS +VM+A GSV+TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL   D I+ + L HGGHL+HG       +S+    +  + Y + ++ G IDYD++E+ A   +PK+IVAG SAY+++ D+ R R + +K  A +  DMAH++GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I  +   +           I KK  S+      GGP
Sbjct:   26 QEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHAGSQANAAVYLALLSAGDTILGMSLAHGGHLTHG-----ASVSSSGKLYNAIQYGI-DANGLIDYDEVERLAVEHKPKMIVAGFSAYSQILDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLILAKANAD-----------IEKKLNSAVFPGAQGGP 263          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_METMA (Serine hydroxymethyltransferase OS=Methanosarcina mazei GN=glyA PE=3 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 3.360e-56
Identity = 114/220 (51.82%), Postives = 153/220 (69.55%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            L LI SEN+ S +VM+A GS+MTNKY+EGY G RYYGG +++D+AE+L   RA E F        VNVQ  SGS +N  VY ++L+P D I+++DL HGGHLSHG       +S     +  +PY +++ T  +DYD+L K A   +P++IV GASAY R+ D++R R++ ++  A +LAD+AHI+GLV AGV PSP  YAD VTTTTHK+LRGPRG MI
Sbjct:   26 LNLIASENYASRAVMEAQGSIMTNKYAEGYSGKRYYGGCDFVDVAENLAIARAKELFGAKY----VNVQPHSGSGANMAVYFSVLQPGDTILSMDLSHGGHLSHG-----SPVSFSGKLYNIVPYGVSKETEALDYDELLKLAKECKPRMIVCGASAYPRVIDFKRFREIADEVGAYLLADIAHIAGLVVAGVHPSPVPYADFVTTTTHKTLRGPRGGMI 236          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.360e-56
Identity = 113/239 (47.28%), Postives = 161/239 (67.36%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDY++L+K A   RPK+IV+GASAY R+ D+++IR++C++  A M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I     + K V++    G +
Sbjct:   28 IELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAEH----ANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYEKLKKIALENRPKMIVSGASAYPRIIDFQKIREICDEIDAYMMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKEKYAKAVDKAIFPGIQ 257          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_AZOVD (Serine hydroxymethyltransferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.360e-56
Identity = 114/229 (49.78%), Postives = 156/229 (68.12%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            +ELI SEN+TS +VM+A GSV+TNKY+EGYPG RYYGG EY+D+ E L   RA + F  D      NVQ  +GS +N  VY AL+KP D ++ + L HGGHL+HG       ++     +  + Y + ++ G+IDYD++E+ A   +PK+IVAG SAY+++ D+ R R++ +K  A +  DMAH +GLVAAGV P+P  +ADVVTTTTHK+LRGPRG +I   K  EEI
Sbjct:   30 IELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKQLFGADY----ANVQPHAGSQANAAVYQALVKPGDTVLGMSLAHGGHLTHG-----ASVNFSGKMYNAVQYGI-DANGFIDYDEVERLALEHKPKMIVAGYSAYSQVLDFARFREIADKVGAYLFVDMAHFAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLI-LAKANEEI 247          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_THESQ (Serine hydroxymethyltransferase OS=Thermotoga sp. (strain RQ2) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 111/221 (50.23%), Postives = 151/221 (68.33%), Query Frame = 3
Query:   21 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            GLELI SENF S++V++ +GS++TNKY+EGYP  RYYGG E++D AE L  +RA   F         NVQ  SGS +N  VY AL +P D IM + L HGGHL+HG       ++     F+ +PY +N  T  IDYD++ + A   +PK+IVAG SAYAR+ D++R R++ ++  A ++ DMAH +GLVAAG+ P+P EYA VVT+TTHK+LRGPRG +I
Sbjct:   26 GLELIASENFASLAVIETMGSMLTNKYAEGYPQKRYYGGCEWVDRAEELAIERAKRLFGAK----FANVQPHSGSQANMAVYLALAQPGDTIMGMSLSHGGHLTHG-----APVNFSGKIFKVVPYGVNLETETIDYDEVRRLALEHKPKIIVAGGSAYARIIDFKRFREIADEVGAYLMVDMAHFAGLVAAGIHPNPLEYAHVVTSTTHKTLRGPRGGLI 237          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_THEP1 (Serine hydroxymethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 111/221 (50.23%), Postives = 151/221 (68.33%), Query Frame = 3
Query:   21 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            GLELI SENF S++V++ +GS++TNKY+EGYP  RYYGG E++D AE L  +RA   F         NVQ  SGS +N  VY AL +P D IM + L HGGHL+HG       ++     F+ +PY +N  T  IDYD++ + A   +PK+IVAG SAYAR+ D++R R++ ++  A ++ DMAH +GLVAAG+ P+P EYA VVT+TTHK+LRGPRG +I
Sbjct:   26 GLELIASENFASLAVIETMGSMLTNKYAEGYPQKRYYGGCEWVDRAEELAIERAKRLFGAK----FANVQPHSGSQANMAVYLALAQPGDTIMGMSLSHGGHLTHG-----APVNFSGKIFKVVPYGVNLETETIDYDEVRRLALEHKPKIIVAGGSAYARIIDFKRFREIADEVGAYLMVDMAHFAGLVAAGIHPNPLEYAHVVTSTTHKTLRGPRGGLI 237          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CHLL2 (Serine hydroxymethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=glyA PE=3 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 121/268 (45.15%), Postives = 168/268 (62.69%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK------GVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            T  Q + LELI SENFTS +VMQA GS+MTNKY+EGYPG RYYGG E++D+AE+L + RA + F        VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     F+   Y ++  TG ID +++E+ A   RPKLI+ GASAY++ +D++  R++ +K  A+++AD+AH +GL+AAG++  P  +   VTTTTHK+LRGPRG MI          G+   T  G    M+ +   +  +    GGP
Sbjct:   21 TLRQTETLELIASENFTSRAVMQACGSLMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCQY----VNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SPVNFSGQLFDAHSYGVDRETGCIDMNRVEELALEVRPKLIICGASAYSQGFDFKAFREIADKVGALLMADIAHPAGLIAAGLLSDPMPHCHFVTTTTHKTLRGPRGGMIMMGSDFENPLGITIKTKTGSRVKMMSEVMDAEVMPGIQGGP 279          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACSU (Serine hydroxymethyltransferase OS=Bacillus subtilis GN=glyA PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 109/224 (48.66%), Postives = 153/224 (68.30%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D+ E + + RA E F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   + +  + Y +++ T YIDYD + + A   +PKLIVAGASAY R  D+++ R++ ++  A  + DMAHI+GLVAAG+ P+P  YAD VTTTTHK+LRGPRG MI  R+
Sbjct:   26 IELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRAKEIFGAEH----VNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTHG-----SPVNFSGVQYNFVEYGVDKETQYIDYDDVREKALAHKPKLIVAGASAYPRTIDFKKFREIADEVGAYFMVDMAHIAGLVAAGLHPNPVPYADFVTTTTHKTLRGPRGGMILCRE 240          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA1_PSESM (Serine hydroxymethyltransferase 1 OS=Pseudomonas syringae pv. tomato GN=glyA1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.388e-56
Identity = 111/227 (48.90%), Postives = 151/227 (66.52%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVE 704
            +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D  E L  +RA + F  D      NVQ  SGS +N  VY ALL+  D ++ + L HGGHL+HG      K+S     +  + Y ++ +TG IDYD++E+ A   +PK+++AG SAY++  D+ R R + +K  A +  DMAH++GLVAAG+ P+P  YADVVTTTTHK+LRGPRG +I  +   E
Sbjct:   30 IELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEQLAIERARQLFGADY----ANVQPHSGSQANAAVYLALLQAGDTVLGMSLAHGGHLTHG-----AKVSFSGKLYNAVQYGIDTTTGLIDYDEVERIAVECQPKMLIAGFSAYSKTLDFPRFRAIADKVGAYLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRGPRGGLILAKANEE 247          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_KLEP7 (Serine hydroxymethyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 113/233 (48.50%), Postives = 155/233 (66.52%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDYD + K A   +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GL+AAGV P+P  +A VVTTTTHK+L GPRG +I  + G EE+
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYDDMAKQAQEHKPKMIIGGFSAYSGIVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEEL 248          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA2_PSEPF2.573e-5646.33Serine hydroxymethyltransferase 2 OS=Pseudomonas f... [more]
GLYA_METMA3.360e-5651.82Serine hydroxymethyltransferase OS=Methanosarcina ... [more]
GLYA_CLOBJ3.360e-5647.28Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_AZOVD3.360e-5649.78Serine hydroxymethyltransferase OS=Azotobacter vin... [more]
GLYA_THESQ4.388e-5650.23Serine hydroxymethyltransferase OS=Thermotoga sp. ... [more]
GLYA_THEP14.388e-5650.23Serine hydroxymethyltransferase OS=Thermotoga petr... [more]
GLYA_CHLL24.388e-5645.15Serine hydroxymethyltransferase OS=Chlorobium limi... [more]
GLYA_BACSU4.388e-5648.66Serine hydroxymethyltransferase OS=Bacillus subtil... [more]
GLYA1_PSESM4.388e-5648.90Serine hydroxymethyltransferase 1 OS=Pseudomonas s... [more]
GLYA_KLEP75.731e-5648.50Serine hydroxymethyltransferase OS=Klebsiella pneu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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