EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_KLEP3 (Serine hydroxymethyltransferase OS=Klebsiella pneumoniae (strain 342) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 113/233 (48.50%), Postives = 155/233 (66.52%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L  GGHL+HG       ++     +  +PY ++ES G IDYD + K A   +PK+I+ G SAY+ + D+ ++R++ +   A +  DMAH++GL+AAGV P+P  +A VVTTTTHK+L GPRG +I  + G EE+
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHG-----SPVNFSGKLYNIIPYGIDES-GKIDYDDMAKQAQEHKPKMIIGGFSAYSGIVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGSEEL 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 112/228 (49.12%), Postives = 153/228 (67.11%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q   +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG E++D  E L  +RA   F  +      NVQ  SG+ +N  VY A L+P D ++ ++L HGGHL+HG       ++    +F  + Y ++  TG IDYD++ + A   +PKLIVAGASAY R+ D+ R R + ++  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  ++
Sbjct:   25 QKNNIELIASENFVSEAVMEAAGSVLTNKYAEGYPGKRYYGGCEFVDQVERLAIERAKRLFGAEH----ANVQPHSGANANMGVYFACLEPGDTVLGMNLAHGGHLTHG-----SPVNISGKYFRFVAYGVDAHTGRIDYDEVARIARETKPKLIVAGASAYPRVLDFARFRAIADEVGAMLMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMILCKQ 243          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_GEOLS (Serine hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 113/231 (48.92%), Postives = 154/231 (66.67%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            T  Q   LELI SENF S +V++A GSVMTNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  +      NVQ  +GS +N  VY A+ +P D I+ ++L HGGHL+HG       ++    F+  +PY ++  T  IDY+++E+ A   +PK+IV GASAY R+ D+   R + +K  A ++ DMAHI+GLVAAGV P+P  YA+ VTTTTHK+LRGPRG MI  R+
Sbjct:   19 TERQEYNLELIASENFVSEAVLEAQGSVMTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAEH----ANVQPHAGSQANMAVYNAVCQPGDTILGMNLSHGGHLTHG-----SPVNFSGRFYNVVPYGVSPDTETIDYNEVERLALEHKPKMIVVGASAYPRIIDFPAFRAIADKVGAKVMVDMAHIAGLVAAGVHPNPVPYAEFVTTTTHKTLRGPRGGMILCRE 240          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_GEOKA (Serine hydroxymethyltransferase OS=Geobacillus kaustophilus GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 114/239 (47.70%), Postives = 158/239 (66.11%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG EY+D+ E L ++RA + F  +     VNVQ  SG+ +N  VY  +L+  D ++ ++L HGGHL+HG       ++   I +  + Y ++  T  IDYD + + A L RPKLIVAGASAY R+ D+ + R++ ++  A ++ DMAHI+GLVAAGV P+P  YA  VTTTTHK+LRGPRG MI     F K +++    G +
Sbjct:   26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEDLARERAKQLFGAEH----VNVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHG-----SPVNFSGIQYNFVEYGVDPETHVIDYDDVREKARLHRPKLIVAGASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGVHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFAKQIDKAIFPGIQ 255          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ANATD (Serine hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 112/228 (49.12%), Postives = 156/228 (68.42%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q   +ELI SENF S++VM A+GS +TNKY+EGYPG RYYGG EYID+ ES+  +RA + F  +      NVQ  SG+ +N  VY A+L P D I+ ++L HGGHL+HG       ++     +  + Y ++  T  I+YD++ K A   RPKLI+AGASAY R+ D+++ R++ ++  A ++ DMAHI+GLVAAG+ PSP EYAD VTTTTHK+LRGPRG +I  ++
Sbjct:   25 QQNKIELIASENFVSIAVMAAMGSPLTNKYAEGYPGKRYYGGCEYIDVVESIAIERAKKLFGAEH----ANVQPHSGAQANMAVYFAVLNPGDTILGMNLSHGGHLTHG-----SPVNFSGKLYNIISYGVDPETETINYDEVLKLAKEHRPKLILAGASAYPRVIDFKKFREIADEVGAYLMVDMAHIAGLVAAGLHPSPVEYADFVTTTTHKTLRGPRGGLILCKE 243          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.731e-56
Identity = 107/226 (47.35%), Postives = 154/226 (68.14%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            R Q + + LIPSEN+ S +V++A G+V+TNKYSEGYP  RYY G ++ID  E++  +RA + F +D      NVQ  SGSP+N  +Y ALL P D +M + LP GGHL+HG+      +SA  I+F ++ Y +   TG ID+D++ + A   RPK+I AG +A  R+ D+    ++  +  A+++AD+AHISGLVA GV PSP  +AD+++TTTHK+LRGPRGAM+
Sbjct:   27 RRQSEKIRLIPSENYVSKAVLEATGTVLTNKYSEGYPNRRYYEGQQFIDQIETIAIERAKQLFGVDH----ANVQPYSGSPANLAIYLALLSPGDTVMGMALPMGGHLTHGWP-----VSATGIWFRSVQYGVRRDTGRIDFDEVREVARRERPKVIFAGGTAIPRIIDFAAFAEIAREVNAVLVADIAHISGLVAGGVHPSPVGHADIISTTTHKTLRGPRGAML 243          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.485e-56
Identity = 113/224 (50.45%), Postives = 151/224 (67.41%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            LELI SENF S +VM A GSVMTNKY+EG PGARYYGG EY+D+ E L + R  E F  +      NVQ  SG+ +N  VY A L+P   IM ++L HGGHL+HG      K++    +F  + Y +N  T  IDY++L + A   RP++IVAGASAY R+ D+++ R++ ++  A++  DMAHI+GLVAAG+ PSP  YAD V++TTHK+LRGPRG  I  R+
Sbjct:   30 LELIASENFVSRAVMAAQGSVMTNKYAEGLPGARYYGGCEYVDIVEELARDRVKEIFGAEH----ANVQPHSGAQANTAVYFAALQPGQTIMGMNLNHGGHLTHG-----SKVNISGKYFNIVDYGVNRDTERIDYEELREIALKARPQMIVAGASAYPRILDFKKFREIADEAGALLFVDMAHIAGLVAAGLHPSPVPYADFVSSTTHKTLRGPRGGFILCRQ 244          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_SERP5 (Serine hydroxymethyltransferase OS=Serratia proteamaculans (strain 568) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.485e-56
Identity = 111/233 (47.64%), Postives = 155/233 (66.52%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            Q + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D I+ ++L HGGHL+HG       ++     +  +PY ++E  G IDY+ L K A   +PK+I+ G SA++ + D+ ++R++ +   A +  DMAH++GL+AAGV P+P  +A +VTTTTHK+L GPRG +I  + G E++
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTILGMNLAHGGHLTHG-----SPVNLSGKLYNVVPYGIDEK-GQIDYEDLAKQAQTHKPKMIIGGFSAFSGIVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHIVTTTTHKTLAGPRGGLILAKGGDEDL 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_HALHL (Serine hydroxymethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.485e-56
Identity = 118/255 (46.27%), Postives = 162/255 (63.53%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            +ELI SEN+ S  VM+A GSV+TNKY+EGYPG RYYGG E++D+AE L   RA + F  D      NVQ  SGS +N  V+ ALLKP D I+ + L HGGHL+HG      K++     F  + Y +N+  G IDYD++++ AT  +PK+++ G SAY+++ D+ R+R++ +   A ++ DMAHI+GLVAAGV PSP  +AD VT+TTHK+LRGPRG +I  R   +           + KK  S     T GGP
Sbjct:   30 IELIASENYASPRVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVAEQLAIDRAKQLFGADY----ANVQPHSGSQANAAVFHALLKPGDTILGMSLDHGGHLTHG-----AKVNFSGKLFNAVQYGINDD-GQIDYDEIQRLATEHQPKMVIGGFSAYSQVVDWARLRQIADSVGAYLVVDMAHIAGLVAAGVYPSPIPHADAVTSTTHKTLRGPRGGIILARSNPD-----------LEKKFQSLVFPGTQGGP 263          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSF (Serine hydroxymethyltransferase OS=Geobacter sp. (strain FRC-32) GN=glyA PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.485e-56
Identity = 114/231 (49.35%), Postives = 152/231 (65.80%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            T  Q   LELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  +      NVQ  SGS +N  VY  +LKP D ++ ++L HGGHL+HG       ++    FF  +PY + + +  IDY ++E+ A   +PK+IV GASAY R  D+   RK+ +K  A+++ DMAHI+GLVAAG+ PSP  +A+ VTTTTHK+LRGPRG MI  R+
Sbjct:   19 TERQEFNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHNVDIVENLAIDRAKELFGAEH----ANVQPHSGSQANMAVYFTVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKFFNIVPYGVTKESQTIDYAEVERLAVEHKPKMIVVGASAYPRTIDFAAFRKIADKVGAVVMVDMAHIAGLVAAGLHPSPVPHAEFVTTTTHKTLRGPRGGMILCRE 240          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_KLEP35.731e-5648.50Serine hydroxymethyltransferase OS=Klebsiella pneu... [more]
GLYA_HELMI5.731e-5649.12Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_GEOLS5.731e-5648.92Serine hydroxymethyltransferase OS=Geobacter lovle... [more]
GLYA_GEOKA5.731e-5647.70Serine hydroxymethyltransferase OS=Geobacillus kau... [more]
GLYA_ANATD5.731e-5649.12Serine hydroxymethyltransferase OS=Anaerocellum th... [more]
GLYA_ACIC15.731e-5647.35Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA_SYNWW7.485e-5650.45Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_SERP57.485e-5647.64Serine hydroxymethyltransferase OS=Serratia protea... [more]
GLYA_HALHL7.485e-5646.27Serine hydroxymethyltransferase OS=Halorhodospira ... [more]
GLYA_GEOSF7.485e-5649.35Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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