EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9243 contig Csv1_Contig9243:311..1202. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 4.499e-85
Identity = 156/262 (59.54%), Postives = 196/262 (74.81%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXEC-FMIMKKK*SSCLSWTPGGPH 791
            Q   + LIPSENFTS +VM  +GS + NKYSEGYPG RYYGGNE ID +ESLCQ RALE + LDP KWGVNVQ LSG+P+N  VY+A++   +R+M LDLP GGHLSHGYQ  +   IS +S +F++MPY ++ +TG IDYD L+  A  FRPK+IVAG SAY+RL DY R +++     A +++DMAHISGLVAA V+PSPFE++D+VTTTTHKSLRGPRGAMIFFRKG++ +T +G E  + + KK   S      GGPH
Sbjct:   51 QKHSITLIPSENFTSKAVMDLLGSELQNKYSEGYPGERYYGGNEIIDKSESLCQARALELYGLDPAKWGVNVQPLSGAPANLYVYSAIMNVGERLMGLDLPDGGHLSHGYQLKSGTPISFISKYFQSMPYHVDHTTGLIDYDNLQVLAKAFRPKVIVAGTSAYSRLIDYARFKEISQGCGAYLMSDMAHISGLVAANVVPSPFEHSDIVTTTTHKSLRGPRGAMIFFRKGIKSVTKKGKEIPYELEKKINFSVFPGHQGGPH 312          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 4.720e-73
Identity = 130/230 (56.52%), Postives = 171/230 (74.35%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGV 701
            Q K + LI SEN+   S M+A GSV+TNKYSEG  G RYYGG  ++D  E LCQKRALE F LDP+ WGVNVQ  SGSP+NF +YTA++ P  RIM LDLP GGHL+HGY+T T+KISA S++F++ PY +  S G IDY+ LEK+ T F P +++ G SAY+R  DY+R++ +  +  A + AD++HIS LVA+G++ SPFE+ D+V TTT K LRGPRGA+IF+R+ V
Sbjct:   32 QKKTINLIASENYAHQSAMEACGSVLTNKYSEGRVGERYYGGTHWVDRIELLCQKRALELFGLDPDVWGVNVQPYSGSPANFAIYTAVVPPGGRIMGLDLPSGGHLTHGYKTKTRKISASSVYFDSRPYTVG-SNGLIDYEGLEKTFTDFLPHILICGYSAYSRDIDYKRLQSIAGRNGAFLFADISHISPLVASGLMNSPFEHCDIVMTTTQKGLRGPRGALIFYRRAV 260          

HSP 2 Score: 25.7942 bits (55), Expect = 4.720e-73
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 2
Query:  785 PTHHTITGLAXAL----NRHYSEY--KAIRSKSEQCSKL 883
            P +HTI G+A AL       ++EY  + + +  E CS+L
Sbjct:  285 PHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRL 323          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.034e-61
Identity = 125/225 (55.56%), Postives = 152/225 (67.56%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKG 698
            LELI SEN  S +VM A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA E F+ D      NVQ  SGS +N  VY ALL+P D ++ +DL HGGHL+HG       +S     F  + Y + E TG IDYDQL   A   +PKLIVAGASAY R+ D+  + K+  +  A ++ DMAHI+GLVAAG  PSP  YADVVTTTTHK+LRGPRG MI   KG
Sbjct:   28 LELIASENIASPAVMAAQGSVMTNKYAEGYPGHRYYGGCEFVDVAENLARDRAKELFQADY----ANVQPHSGSQANMGVYFALLEPGDTVLGMDLSHGGHLTHG-----SPVSFSGRIFNFIHYGVKEKTGTIDYDQLRSLAKEHKPKLIVAGASAYPRIIDFPELEKIARETGAYLMVDMAHIAGLVAAGEHPSPLPYADVVTTTTHKTLRGPRGGMILSNKG 243          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.009e-60
Identity = 117/224 (52.23%), Postives = 157/224 (70.09%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            +ELI SENF S +VM+A+G+ +TNKY+EGYPG RYYGG EY+DMAE L ++R  + F  +      NVQ  SG+ +N   Y ALLKP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYDQ+E  A   +PKLIVAGASAY R+ D+++ R++ +K  A ++ DMAHI+GLVAAG+ P+P  YADVVTTTTHK+LRGPRG  I  ++
Sbjct:   28 IELIASENFVSRAVMEAMGTPLTNKYAEGYPGRRYYGGCEYVDMAEELARERLKKLFGAEH----ANVQPHSGAQANMAAYFALLKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDQVEDLAKKHKPKLIVAGASAYPRIIDFKKFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGAILCKQ 242          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.318e-60
Identity = 121/220 (55.00%), Postives = 160/220 (72.73%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            LE+I SENFTS +VM+A+GSV TNKY+EGYPG RYYGG EY D  E L  +RA E F  +     VNVQ  SGS +N  VY ALLKP+D+I+ +DL HGGHL+HG      K++A    +++  Y +N+  G+IDYD++   A + +PKLIV GASAY R+ D+++ R++ ++  A+++AD+AHI+GLVAAG  PSPF Y DVVTTTTHK+LRGPRG MI
Sbjct:   26 LEMIASENFTSPAVMEAMGSVFTNKYAEGYPGKRYYGGCEYADAIEELAIQRAKELFGCE----FVNVQPHSGSQANQGVYLALLKPYDKILGMDLSHGGHLTHG-----AKVNASGKIYQSFFYGVNDE-GWIDYDRVLDIAKIVKPKLIVCGASAYPRVIDFKKFREIADEVGALLMADIAHIAGLVAAGEHPSPFPYCDVVTTTTHKTLRGPRGGMI 235          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_THEPX (Serine hydroxymethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=glyA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 5.009e-60
Identity = 115/224 (51.34%), Postives = 157/224 (70.09%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG EY+D+AE L ++R  + F  +      NVQ  SG+ +N   Y AL+KP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYD++E+ A   +PKLIVAGASAY R+ D++R R++ +K  A ++ DMAHI+GLVAAG+ P+P  YADVVTTTTHK+LRGPRG  I  ++
Sbjct:   28 IELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAEH----ANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGAILCKE 242          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_THEP3 (Serine hydroxymethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glyA PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 5.009e-60
Identity = 115/224 (51.34%), Postives = 157/224 (70.09%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            +ELI SENF S +VM+A+GS +TNKY+EGYP  RYYGG EY+D+AE L ++R  + F  +      NVQ  SG+ +N   Y AL+KP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYD++E+ A   +PKLIVAGASAY R+ D++R R++ +K  A ++ DMAHI+GLVAAG+ P+P  YADVVTTTTHK+LRGPRG  I  ++
Sbjct:   28 IELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAEH----ANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPRIIDFKRFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRGPRGGAILCKE 242          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BAUCH (Serine hydroxymethyltransferase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=glyA PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.544e-60
Identity = 126/259 (48.65%), Postives = 167/259 (64.48%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            Q + +ELI SEN+TS  VMQA GS++TNKY+EGY G RYYGG  Y+D  E+L   RA   F  D      NVQ  SGS +NF VYTALLKP D I+ ++L HGGHL+HG       ++     +  + Y +N++ GYIDY+QL K AT+ +PK+I+ G SAY+R+ D++ +R+V +  KA +  DMAHI+GLVAAGV P+P  YADVVTTTTHK+L GPRG +I  + G +E          + KK  S+      GGP
Sbjct:   26 QEEHIELIASENYTSPRVMQAQGSILTNKYAEGYSGKRYYGGCVYVDQVETLAIDRAKALFECDY----ANVQPHSGSQANFAVYTALLKPGDTILGMNLAHGGHLTHG-----ASVNFSGKMYNVISYGVNKN-GYIDYEQLNKLATMHKPKMIIGGFSAYSRVVDWDIMRQVADSIKAFLFVDMAHIAGLVAAGVYPNPVPYADVVTTTTHKTLAGPRGGLILAQGGSKE----------MYKKLDSAVFPGAQGGP 264          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.903e-59
Identity = 119/245 (48.57%), Postives = 162/245 (66.12%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            R Q +GLELI SENF S +V+QA GSV TNKY+EGYPG RYYGG EY D+ E+L + RA E F  +      NVQ  SGS +N + Y A+L+P D I+ L+L HGGHL+HG+  +    +     ++ +PY + + T  IDYD+LEK A    PK+IV G SAY R++D++R+R++ +K  A+ + DMAH +GLVA G  PSP  +A VVTTTTHK+LRGPR  MI     F   ++++T  G +
Sbjct:   25 RRQHEGLELIASENFVSEAVLQAAGSVFTNKYAEGYPGKRYYGGCEYADVVENLARDRAKELFGAEH----ANVQPHSGSSANMEAYGAILQPGDTILGLNLAHGGHLTHGHPLNFSGKT-----YKIVPYGVTKETETIDYDELEKLALEHHPKVIVGGGSAYPRIFDFKRMREIADKAGALFMVDMAHFAGLVAGGAHPSPVPHAHVVTTTTHKTLRGPRAGMILSKQEFAAAIDKVTFPGMQ 260          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPH (Serine hydroxymethyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=glyA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.538e-59
Identity = 126/261 (48.28%), Postives = 165/261 (63.22%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            R Q + +ELI SEN+ S  V++A GSV+TNKY+EGYPG RYYGG E++D+AE L   RA   F        VNVQ  SGS +N  V  ALL P D  M + LPHGGHL+HG      K++     + ++ Y ++ +TG IDYD LEK A   +PKLI+AG SAY+R+ D+ R R++ +K  A ++AD+AH++GLVA G+ PSP  YADVVTTTTHK+LRGPRG +I  ++  E           I KK  SS      GGP
Sbjct:   24 RRQEEHIELIASENYVSPRVLEAQGSVLTNKYAEGYPGKRYYGGCEFVDVAEELAISRAKLLFGAHY----VNVQPHSGSQANAAVMMALLSPGDTFMGMALPHGGHLTHG-----SKVNFSGKLYHSVEYGVDSNTGLIDYDALEKLALQHKPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTLRGPRGGLILCKENEE-----------IEKKLNSSVFPGMQGGP 264          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_YEAST4.499e-8559.54Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ENCCU4.720e-7356.52Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_DESAA2.034e-6155.56Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_THETN1.009e-6052.23Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_NITSB1.318e-6055.00Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_THEPX5.009e-6051.34Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_THEP35.009e-6051.34Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_BAUCH8.544e-6048.65Serine hydroxymethyltransferase OS=Baumannia cicad... [more]
GLYA_ACIBL1.903e-5948.57Serine hydroxymethyltransferase OS=Acidobacteria b... [more]
GLYA_LEGPH5.538e-5948.28Serine hydroxymethyltransferase OS=Legionella pneu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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