EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPC (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Corby) GN=glyA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.538e-59
Identity = 126/261 (48.28%), Postives = 165/261 (63.22%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            R Q + +ELI SEN+ S  V++A GSV+TNKY+EGYPG RYYGG E++D+AE L   RA   F        VNVQ  SGS +N  V  ALL P D  M + LPHGGHL+HG      K++     + ++ Y ++ +TG IDYD LEK A   +PKLI+AG SAY+R+ D+ R R++ +K  A ++AD+AH++GLVA G+ PSP  YADVVTTTTHK+LRGPRG +I  ++  E           I KK  SS      GGP
Sbjct:   24 RRQEEHIELIASENYVSPRVLEAQGSVLTNKYAEGYPGKRYYGGCEFVDVAEELAISRAKLLFGAHY----VNVQPHSGSQANAAVMMALLSPGDTFMGMALPHGGHLTHG-----SKVNFSGKLYHSVEYGVDSNTGLIDYDALEKLALQHKPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTLRGPRGGLILCKENEE-----------IEKKLNSSVFPGMQGGP 264          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPA (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Paris) GN=glyA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.538e-59
Identity = 126/261 (48.28%), Postives = 165/261 (63.22%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            R Q + +ELI SEN+ S  V++A GSV+TNKY+EGYPG RYYGG E++D+AE L   RA   F        VNVQ  SGS +N  V  ALL P D  M + LPHGGHL+HG      K++     + ++ Y ++ +TG IDYD LEK A   +PKLI+AG SAY+R+ D+ R R++ +K  A ++AD+AH++GLVA G+ PSP  YADVVTTTTHK+LRGPRG +I  ++  E           I KK  SS      GGP
Sbjct:   24 RRQEEHIELIASENYVSPRVLEAQGSVLTNKYAEGYPGKRYYGGCEFVDVAEELAISRAKLLFGAHY----VNVQPHSGSQANAAVMMALLSPGDTFMGMALPHGGHLTHG-----SKVNFSGKLYHSVEYGVDSNTGLIDYDALEKLALQHKPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTLRGPRGGLILCKENEE-----------IEKKLNSSVFPGMQGGP 264          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.538e-59
Identity = 117/243 (48.15%), Postives = 158/243 (65.02%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            Q   + LI SEN+ S +V++A GS++TNKYSEGYPG RYY G + ID  ES+   RA   F  +     VNVQ  SGSP+N  VY A LKP D I+ + LPHGGHL+HG      K+S    +F  + Y LNE  G +DY+++   A   +PK+++AG SAY R+ D+ + R++ ++  A+++ DMAH +GLVA GV PSPF YADVVTTTTHKSLRGPRGAMI     + K +++    G +
Sbjct:   31 QHNKIRLIASENYVSSAVLEATGSILTNKYSEGYPGKRYYEGQQLIDQIESIAIDRAKAVFGAEH----VNVQPYSGSPANMAVYLAFLKPGDTILGMALPHGGHLTHG-----SKVSISGKYFNAVSYALNEE-GILDYEEIRNKALECKPKILIAGHSAYPRILDFAKFREIADEVGALLMVDMAHFAGLVAGGVHPSPFPYADVVTTTTHKSLRGPRGAMIMCKAEYAKAIDKAVFPGMQ 263          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_LEGPL (Serine hydroxymethyltransferase OS=Legionella pneumophila (strain Lens) GN=glyA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.234e-58
Identity = 125/261 (47.89%), Postives = 165/261 (63.22%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            R Q + +ELI SEN+ S  V++A GSV+TNKY+EGYPG RYYGG E++D+AE L   RA   F        VNVQ  SGS +N  V  ALL P D  M + LPHGGHL+HG      K++     + ++ Y ++ +TG IDYD LEK A   +PKLI+AG SAY+R+ D+ R R++ +K  A ++AD+AH++GLVA G+ PSP  YADVVTTTTHK+LRGPRG +I  ++  E           I KK  S+      GGP
Sbjct:   24 RRQEEHIELIASENYVSPRVLEAQGSVLTNKYAEGYPGKRYYGGCEFVDVAEELAISRAKLLFGAHY----VNVQPHSGSQANAAVMMALLSPGDTFMGMALPHGGHLTHG-----SKVNFSGKLYHSVEYGVDNNTGLIDYDALEKLALQHKPKLIIAGFSAYSRILDWARFREIADKVGAYLMADIAHVAGLVAVGLYPSPVPYADVVTTTTHKTLRGPRGGLILCKENEE-----------IEKKLNSAVFPGMQGGP 264          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.234e-58
Identity = 115/228 (50.44%), Postives = 160/228 (70.18%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEE 707
            +ELI SEN+ S +VM A+GS++TNKY+EGYPG RYYGG E +D  E L ++RA E F  +     VNVQ  SG+ +N  V  A+LKP D IM ++L HGGHL+HG       ++    +F  +PY +N+  G+IDYD++E+ A   +PK+I+AGASAYAR  D++R R++ +K  A+++ DMAHI+GLVAAG+ PSP  YA V TTTTHK+LRGPRG MI   + +++
Sbjct:   29 IELIASENWVSPAVMSAMGSILTNKYAEGYPGRRYYGGCECVDEVEELARERAKELFGAEY----VNVQPHSGAQANMAVQFAILKPGDTIMGMNLDHGGHLTHG-----SPVNFSGSYFHVVPYGVNDE-GFIDYDKVEEIALECKPKMIIAGASAYARTIDFKRFREIADKVDAVLMVDMAHIAGLVAAGLHPSPIPYAHVTTTTTHKTLRGPRGGMILCSQEMQD 246          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.234e-58
Identity = 116/228 (50.88%), Postives = 158/228 (69.30%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q + +ELI SENF S +V++A GS++TNKY+EGYPG RYYGG E++D+AESL   RA + F  D      NVQ  SG+ +NF VY ALL+P D+I+ ++L HGGHL+HG       ++    +F  + Y + E TG I+Y++L + A   +PK+IVAGASAYAR  D+++I ++  +  A    DMAHI+GLVAAG+  SP  YADVVTTTTHK+LRGPRG MI  ++
Sbjct:   24 QQRNIELIASENFVSPAVLEAQGSILTNKYAEGYPGKRYYGGCEFVDIAESLAISRAKKLFGADH----ANVQPHSGAQANFAVYFALLQPGDKILGMNLAHGGHLTHG-----SPVNVSGKYFNVVAYGVEEDTGCINYEKLREIALQEKPKMIVAGASAYARAIDFKKIGEIAKEIDAYFFVDMAHIAGLVAAGLHQSPVPYADVVTTTTHKTLRGPRGGMILCKE 242          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CHLCH (Serine hydroxymethyltransferase OS=Chlorobium chlorochromatii (strain CaD3) GN=glyA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.234e-58
Identity = 123/268 (45.90%), Postives = 172/268 (64.18%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK------GVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            T+ Q + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  ++LKP D+IM LDL HGGHL+HG       ++     FE   Y ++  TG ID +++E+ A   RPKLI+ GASAY++ +D++  R + +K  A+++AD+AH +GL+AAG++P+P ++   VTTTTHK+LRGPRG MI          G+   T  G    M+ +   +  +    GGP
Sbjct:   21 TKRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCEY----VNVQPHSGSSANMAVLFSVLKPGDKIMGLDLSHGGHLTHG-----SSVNFSGQMFEAHSYGVDRETGCIDMNKVEEMAMQVRPKLIIGGASAYSQGFDFKAFRAIADKVGALLMADIAHPAGLIAAGLLPNPLQHCHFVTTTTHKTLRGPRGGMIMMGSDFENPLGITIKTKTGSRVKMMSEVMDAEVMPGIQGGP 279          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CLOCE (Serine hydroxymethyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glyA PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.611e-58
Identity = 115/224 (51.34%), Postives = 155/224 (69.20%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            +ELI SENF S +V++A+G+ +TNKY+EGYPG RYYGG EY+D+ E L   RA + F  +      NVQ  SG+ +N  VY A L P D I+ ++L HGGHLSHG       ++    +++ +PY + E   YIDYD+L K+A    PK+IVAGASAY R+ D++  R++ ++  AI++ DMAHI+GLVAAGV PSP  YADVVTTTTHK+LRGPRG MI  ++
Sbjct:   29 IELIASENFVSDAVIEALGTPLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKQIFGAEH----ANVQPHSGAQANTAVYFAFLNPGDTILGMNLAHGGHLSHG-----SPVNISGKYYKVVPYGVREDNCYIDYDELRKTAKENSPKIIVAGASAYPRILDFKAFREIADEVGAILMVDMAHIAGLVAAGVHPSPVPYADVVTTTTHKTLRGPRGGMILCKQ 243          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_BACTN (Serine hydroxymethyltransferase OS=Bacteroides thetaiotaomicron GN=glyA PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.611e-58
Identity = 114/228 (50.00%), Postives = 156/228 (68.42%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q KG+ELI SENF S  VMQA+GS +TNKY+EGYPG RYYGG E +D +E +   R  E F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y LN+ TG +DYDQ+E+ A   +PK+I+ G SAY+R +DY+R+R++ +K  AI++ DMAH +GL+AAG++ +P +YA +VT+TTHK+LRGPRG +I   K
Sbjct:   18 QLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKEIFGAE---WA-NVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLNQETGRVDYDQMEEVALREKPKMIIGGGSAYSREWDYKRMREIADKVGAILMIDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGVIMMGK 236          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.104e-58
Identity = 119/234 (50.85%), Postives = 162/234 (69.23%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVE 704
            T+ Q + LELI SENFTS +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  A+LKP D IM LDL HGGHL+HG      K++    FF+   Y +++ TG ID +++E+ A   +PKLI+ GASAY++ +D++  R+V +K  A+++AD+AH +GLVAAG+  +P  +   VTTTTHK+LRGPRG MI   K  E
Sbjct:   21 TKRQTETLELIASENFTSKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCEY----VNVQPHSGSSANMAVLFAVLKPGDAIMGLDLSHGGHLTHG-----SKVNFSGQFFDAHSYGVDKETGIIDMNKVEEMARRVKPKLIITGASAYSQGFDFKAFREVADKVGALLMADIAHPAGLVAAGLSANPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFE 245          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_LEGPC5.538e-5948.28Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_LEGPA5.538e-5948.28Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_DESPS5.538e-5948.15Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_LEGPL1.234e-5847.89Serine hydroxymethyltransferase OS=Legionella pneu... [more]
GLYA_EUBR31.234e-5850.44Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_DESRM1.234e-5850.88Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_CHLCH1.234e-5845.90Serine hydroxymethyltransferase OS=Chlorobium chlo... [more]
GLYA_CLOCE1.611e-5851.34Serine hydroxymethyltransferase OS=Clostridium cel... [more]
GLYA_BACTN1.611e-5850.00Serine hydroxymethyltransferase OS=Bacteroides the... [more]
GLYA_CHLTE2.104e-5850.85Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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