EY660088

Overview
NameEY660088
Unique NameEY660088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9243 contig Csv1_Contig9243:311..1202. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_PELLD (Serine hydroxymethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=glyA PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.044e-57
Identity = 121/265 (45.66%), Postives = 169/265 (63.77%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK------GVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            Q + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE L ++RA + F  +     VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     F+   Y ++  TG ID +++E+ A  F+P+LI+ GASAY++ +D++  R++ +K  A ++AD+AH +GL+AAG++  P  +   VTTTTHK+LRGPRG MI   K      G+   T  G    M+ +   +  +    GGP
Sbjct:   24 QMETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAEDLARERARKLFGCEY----VNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SSVNFSGQMFDARSYGVDRETGIIDMNKVEEMALDFKPRLIICGASAYSQGFDFKAFREIADKVGAFLMADIAHPAGLIAAGLLTDPMPHCHFVTTTTHKTLRGPRGGMIMMGKDFENPMGITIKTKNGPRVKMMSEVMDAEVMPGIQGGP 279          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_METCA (Serine hydroxymethyltransferase OS=Methylococcus capsulatus GN=glyA PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.044e-57
Identity = 115/233 (49.36%), Postives = 155/233 (66.52%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVE 704
            R Q   +ELI SEN+ S  V+QA G+V+TNKY+EGYPG RYYGG EY+D+ E+L  +RA   F  D      NVQ  SGS +N  VY ALLKP D ++ + L HGGHL+HG      K++     +  + Y LN  TG IDYDQ+++ A   RPK+IVAG SAY+++ D++R R + +   A ++ DMAH++GL+AAG+ PSP + ADV TTTTHK+LRGPRG +I  +   E
Sbjct:   24 RRQEDHIELIASENYASPRVLQAQGTVLTNKYAEGYPGKRYYGGCEYVDIVETLAIERAKRLFGADY----ANVQPHSGSQANAAVYMALLKPGDTVLGMSLAHGGHLTHG-----AKVNFSGKIYNAVQYGLNPETGEIDYDQVDELAREHRPKMIVAGFSAYSQVVDWQRFRAIADSVGAWLMVDMAHVAGLIAAGLYPSPVQIADVTTTTTHKTLRGPRGGLILAKANPE 247          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CLOAB (Serine hydroxymethyltransferase OS=Clostridium acetobutylicum GN=glyA PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.044e-57
Identity = 114/228 (50.00%), Postives = 156/228 (68.42%), Query Frame = 3
Query:   12 QWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            Q   +ELI SENFTS +VM+A+GS +TNKY+EGYPG RYYGG   +D  E L ++RA + F+ +      NVQ  SGS +N  VY A+LKP D IM ++L  GGHL+HG       ++     F  + Y +++ T  IDY+   K A   +PK+IV+GASAY+R+ D+++IR++C++  A M+ DMAHI+GLVAAG+ PSP  YAD VTTTTHK+LRGPRG  IF ++
Sbjct:   24 QENNIELIASENFTSKAVMEAMGSYLTNKYAEGYPGKRYYGGCYVVDKVEELARERAKKLFKAEH----ANVQPHSGSQANMAVYFAVLKPGDTIMGMNLTDGGHLTHG-----SPVNFSGKLFNIIAYGVSDETEQIDYEAFRKKALECKPKMIVSGASAYSRIIDFKKIREICDEVGAYMMVDMAHIAGLVAAGLHPSPIPYADFVTTTTHKTLRGPRGGAIFCKE 242          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA3_PSEPF (Serine hydroxymethyltransferase 3 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.044e-57
Identity = 117/229 (51.09%), Postives = 156/229 (68.12%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEI 710
            +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D  E+L  +RA + F  D      NVQ  SGS +N  VY ALL+  D I+ + L HGGHL+HG      K+S+    +  + Y ++  TG IDYD++E+ A   +PK+IVAG SAY++  D+ R R++ +K  A++  DMAH++GLVAAG+ P+P  YADVVTTTTHK+LRGPRG +I   K  EEI
Sbjct:   30 IELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGADY----ANVQPHSGSSANSAVYLALLQAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGIDTKTGLIDYDEVERLAVECKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRGPRGGLI-LAKANEEI 248          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEAE (Serine hydroxymethyltransferase 1 OS=Pseudomonas aeruginosa GN=glyA1 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.044e-57
Identity = 123/255 (48.24%), Postives = 159/255 (62.35%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVEEITXQGXECFMIMKKK*SSCLSWTPGGP 788
            LELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG E++D  E L   RA + F  D      NVQ  SGS +N  VY ALL   D I+ + L HGGHL+HG      K+S+    +  + Y L+ +TG IDYD++E+ A   +PK+IVAG SAY++  D+ R R + +K  A++  DMAH++GLVAAG+ P+P  +ADVVTTTTHK+LRGPRG +I  R   E           I KK  S+      GGP
Sbjct:   30 LELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVERLAIDRARQLFGADY----ANVQPHSGSSANAAVYLALLNAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGLDTATGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPNPIPFADVVTTTTHKTLRGPRGGLILARANEE-----------IEKKLNSAVFPGAQGGP 264          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA1_HAHCH (Serine hydroxymethyltransferase 1 OS=Hahella chejuensis (strain KCTC 2396) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.044e-57
Identity = 117/233 (50.21%), Postives = 153/233 (65.67%), Query Frame = 3
Query:    6 RPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVE 704
            R Q + +ELI SEN+ S  VM+A G V+TNKY+EGYPG RYYGG E++D+AE L   RA + F  D      NVQ  SGS +N  VY AL KP D I+ + L HGGHL+HG      K +     F  + Y LN  TG IDYDQ+E+ A   +PKL++AG SAY+R+ D++R R + +   A ++ DMAH++GLVAAG+ PSP + ADV TTTTHK+LRGPRG +I  +   E
Sbjct:   24 RRQEEHIELIASENYVSPRVMEAQGGVLTNKYAEGYPGKRYYGGCEHVDVAEQLAIDRAKQLFGADY----ANVQPHSGSQANAGVYLALAKPGDTILGMSLDHGGHLTHG-----AKPNFSGKIFNAVQYGLNPETGEIDYDQVERLAKEHKPKLVIAGFSAYSRVVDWQRFRDIADSVGAYLIVDMAHVAGLVAAGLYPSPVQIADVTTTTTHKTLRGPRGGLILAKSNPE 247          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSL (Serine hydroxymethyltransferase OS=Geobacter sulfurreducens GN=glyA PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.364e-57
Identity = 116/231 (50.22%), Postives = 156/231 (67.53%), Query Frame = 3
Query:    3 TRPQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 695
            T  Q   LELI SENF S +V++A GSVMTNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  ID++++E+ A   +PK+IV GASAY R  D+   R + +K  A+++ DMAHI+GLVAAG+ PSP  YA+ VTTTTHK+LRGPRG MI  R+
Sbjct:   19 TERQEYNLELIASENFVSEAVLEAQGSVMTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGADH----ANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKMIVVGASAYPRTIDFAAFRIIADKVGAVIMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMILCRE 240          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_THEAB (Serine hydroxymethyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glyA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.782e-57
Identity = 110/221 (49.77%), Postives = 153/221 (69.23%), Query Frame = 3
Query:   21 GLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMI 683
            GLELI SENF S++V++A+GSV+TNKY+EGYPG RYYGG E++D+AE L + RA E F +       NVQ  SGS +N   Y A+ +P D IM + L HGGHL+HG       ++     +  +PY +N  T  IDYD++   A   +PK+IVAG SAY+R+ D+++ R++ ++  A ++ DMAH +GLVAAG+ P+P EYA +VT+TTHK+LRGPRG MI
Sbjct:   26 GLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVKY----ANVQPHSGSQANMGAYFAVSEPGDTIMGMSLSHGGHLTHG-----ASVNFSGRIYNVVPYGVNPETEVIDYDEVRDLALKHKPKIIVAGGSAYSRIIDFKKFREIADEVGAYLIVDMAHFAGLVAAGIYPNPAEYAHIVTSTTHKTLRGPRGGMI 237          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBL (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.782e-57
Identity = 116/239 (48.54%), Postives = 161/239 (67.36%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDYDQL+K A   RPK+IV+GASAY R+ D+E+IR++C++  A M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I     + K V++    G +
Sbjct:   28 IELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAEH----ANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYDQLKKIALENRPKMIVSGASAYPRIIDFEKIREICDEIDAYMMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKEKYAKAVDKAIFPGIQ 257          
BLAST of EY660088 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.782e-57
Identity = 116/239 (48.54%), Postives = 161/239 (67.36%), Query Frame = 3
Query:   24 LELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF----FRKGVEEITXQGXE 728
            +ELI SENFTS+SVM+A+GS++TNKY+EGYP  RYYGG E++D  E L ++R  + F  +      NVQ  SGS +N  VY ++L+  D I+ +DL HGGHL+HG       ++     +  + Y +++ T  IDYDQL+K A   RPK+IV+GASAY R+ D+E+IR++C++  A M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I     + K V++    G +
Sbjct:   28 IELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFVAEH----ANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTHG-----SPVNFSGKLYNFISYGVDKETETIDYDQLKKIALENRPKMIVSGASAYPRIIDFEKIREICDEIDAYMMVDMAHIAGLVATGIHPSPVPYADFVTTTTHKTLRGPRGGAILCKEKYAKAVDKAIFPGIQ 257          
The following BLAST results are available for this feature:
BLAST of EY660088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PELLD1.044e-5745.66Serine hydroxymethyltransferase OS=Pelodictyon lut... [more]
GLYA_METCA1.044e-5749.36Serine hydroxymethyltransferase OS=Methylococcus c... [more]
GLYA_CLOAB1.044e-5750.00Serine hydroxymethyltransferase OS=Clostridium ace... [more]
GLYA3_PSEPF1.044e-5751.09Serine hydroxymethyltransferase 3 OS=Pseudomonas f... [more]
GLYA1_PSEAE1.044e-5748.24Serine hydroxymethyltransferase 1 OS=Pseudomonas a... [more]
GLYA1_HAHCH1.044e-5750.21Serine hydroxymethyltransferase 1 OS=Hahella cheju... [more]
GLYA_GEOSL1.364e-5750.22Serine hydroxymethyltransferase OS=Geobacter sulfu... [more]
GLYA_THEAB1.782e-5749.77Serine hydroxymethyltransferase OS=Thermosipho afr... [more]
GLYA_CLOBL1.782e-5748.54Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBK1.782e-5748.54Serine hydroxymethyltransferase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660088 ID=EY660088; Name=EY660088; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCAATGGAAGGGACTTGAACTCATTCCTTCAGAGAACTTT
ACTTCAGTATCCGTGATGCAAGCTGTGGGGTCTGTCATGACCAACAAGTA
CAGTGAAGGATATCCAGGTGCAAGATATTATGGAGGAAACGAGTATATTG
ACATGGCGGAATCCTTATGTCAGAAGCGAGCTCTGGAAGCATTTCGGTTG
GATCCTGAAAAATGGGGAGTGAATGTGCAGTCTCTGTCTGGATCTCCATC
TAATTTTCAAGTCTACACTGCATTGTTAAAACCTCATGATAGGATCATGG
CACTTGATCTTCCTCATGGTGGGCATCTCTCACACGGCTATCAGACAGAT
ACCAAAAAGATATCTGCAGTGTCCATATTTTTTGAGACAATGCCATACAG
ATTGAATGAGAGCACTGGCTATATAGACTATGACCAGTTGGAGAAAAGTG
CCACCCTCTTCAGGCCAAAATTGATTGTTGCTGGTGCTAGTGCTTATGCA
CGATTGTATGATTATGAGCGTATTCGCAAGGTTTGCAACAAACAAAAAGC
TATAATGTTGGCAGATATGGCACACATTAGTGGTTTGGTTGCTGCTGGTG
TCATCCCTTCACCTTTTGAGTATGCAGATGTTGTGACCACCACAACTCAC
AAATCACTTCGTGGGCCACGTGGAGCCATGATTTTCTTTAGGAAGGGAGT
NGAAGAGATTACAANNCAGGGAANNGAGTGTTTTATGATTATGAAGAAAA
AATAATCAAGCTGTCTTTCCTGGACTCCAGGTGGCCCACACACCACACAA
TTACTGGNTTAGCANGTGCCTTGAACAGGCACTACTCCGAGTATAAAGCT
ATCAGGAGCAAGTCTGAGCAATGCTCAAAATTGCACGATCT
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