EY660087

Overview
NameEY660087
Unique NameEY660087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.267e-33
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   32 SSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL 340
            SS CA+CKLL+R+C   CIFAPYF  D+P KFA VHKVFGASNVSK+L E+P  QR D VNSL +EA AR+RDPVYGC+GAI+ LQ ++ +LQ  LAVA+A +
Sbjct:    6 SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 108          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 8.047e-32
Identity = 64/103 (62.14%), Postives = 77/103 (74.76%), Query Frame = 2
Query:   41 CAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 349
            CAACKLL+R+C   C F+PYF   EP KFA VHKVFGASNVSK+L EVPE QR D  NSL YEA  RLRDPVYGC+GAI+ LQ+++  LQ +L   R+ + +Y
Sbjct:   46 CAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKY 148          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.373e-31
Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL 340
            ++S CAACKLL+R+C   C+F+PYF +DEP+KFA VH+VFGASNV+K+L E+P  QR D V+S+ YEA AR+RDPVYGC+GAI+ LQ+++  LQ  LA+A+A +
Sbjct:   10 AASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEV 113          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.381e-30
Identity = 64/116 (55.17%), Postives = 78/116 (67.24%), Query Frame = 2
Query:   41 CAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAASSCAVLND 388
            CAACKLL+R+C   C F+PYF   EP KFA VHKVFGASNVSK+L EV E QR D  NSL YEA  RLRDP+YGC+GAI+ LQ  +  LQ +L   R  + R+    A++   L +
Sbjct:   53 CAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATTITSLQN 168          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 2
Query:   11 GGHEPRSSSSCAACKLLKRKCIP-TCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTT 355
            G    R+ S CA CKLL+RKC+  +C+FAPYF + EP KFA VHK+FGASNV+K+L E+ E  R D V+S+ YEA AR++DPVYGC+G I+ L R++  LQ  LA A+A L    T
Sbjct:    5 GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 2
Query:   35 SSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL 340
            S CAACK+L+R+C   C+ APYF   +P KF   H+VFGASN+ K L E+PE QR D VNS+ YEAEAR+RDPVYGC GAI  LQR++ ELQ  LA A+  +
Sbjct:   32 SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEM 133          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.423e-28
Identity = 59/102 (57.84%), Postives = 72/102 (70.59%), Query Frame = 2
Query:   35 SSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL 340
            S CAACK+L+R+C   C+ APYF   +P KF   H+VFGASN+ K L E+PE QR D VNS+ YEA AR+RDPVYGC GAI  LQR++ ELQ  LA  +  L
Sbjct:   51 SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVEL 152          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.133e-28
Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 2
Query:    8 SGGHEPRSSSS-----CAACKLLKRKCIPTCIFAPYFRSDE-PKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTP 358
            S    P SSS      C ACK L+RKC+  CIFAPYF S++    FA VHKVFGASNVSK+L  VPE +R D V S+ +EA+ARLRDP+YGC+  I  LQ++++ LQ +L+  +A LA    P
Sbjct:    2 SSSGNPSSSSGGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLATLELP 124          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.679e-27
Identity = 56/107 (52.34%), Postives = 77/107 (71.96%), Query Frame = 2
Query:   41 CAACKLLKRKCIPTCIFAPYFRSDEPKK-FAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTP 358
            C ACK L+RKC+P CIFAPYF S++    FA VHKVFGASNVSK+L  +P  +R D V ++ YEA+AR+RDP+YGC+  I  LQ++++ LQ +++  +A LA    P
Sbjct:   38 CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELP 144          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.018e-26
Identity = 56/105 (53.33%), Postives = 79/105 (75.24%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDE-PKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARL 340
            ++S C ACK L+RKC+  CIFAP+F SD+   +FA VHKVFGASNVSK+L  +P  +R D V +++YEA+ARL DPVYGC+  I  LQ+++  LQ +L+V +++L
Sbjct:   48 TASPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQL 152          
The following BLAST results are available for this feature:
BLAST of EY660087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LBD12_ARATH3.267e-3365.05LOB domain-containing protein 12 OS=Arabidopsis th... [more]
LBD15_ARATH8.047e-3262.14LOB domain-containing protein 15 OS=Arabidopsis th... [more]
LBD4_ARATH1.373e-3159.62LOB domain-containing protein 4 OS=Arabidopsis tha... [more]
LBD13_ARATH3.381e-3055.17LOB domain-containing protein 13 OS=Arabidopsis th... [more]
LBD3_ARATH1.285e-2954.31LOB domain-containing protein 3 OS=Arabidopsis tha... [more]
LBD1_ARATH2.192e-2958.82LOB domain-containing protein 1 OS=Arabidopsis tha... [more]
LBD11_ARATH2.423e-2857.84LOB domain-containing protein 11 OS=Arabidopsis th... [more]
LBD30_ARATH4.133e-2852.03LOB domain-containing protein 30 OS=Arabidopsis th... [more]
LBD18_ARATH2.679e-2752.34LOB domain-containing protein 18 OS=Arabidopsis th... [more]
LBD20_ARATH1.018e-2653.33LOB domain-containing protein 20 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660087 ID=EY660087; Name=EY660087; organism=Citrus sinensis; type=EST; length=932bp
CCACGCGTCCGGGGGACACGAACCTCGGTCAAGCTCATCTTGTGCAGCCT
GCAAGTTACTGAAAAGAAAATGCATTCCCACCTGTATTTTTGCACCTTAT
TTTCGGTCCGATGAGCCGAAGAAATTCGCCAAAGTACACAAGGTGTTTGG
AGCAAGCAATGTGAGCAAGATCCTGACGGAAGTTCCTGAAGAGCAACGCG
AGGACACCGTGAACTCGCTTGCGTATGAAGCTGAGGCTCGGCTTAGAGAC
CCCGTTTATGGGTGCATTGGTGCCATAGCTTTGCTGCAAAGAAAGATGAT
TGAGCTTCAGCAGGATTTGGCCGTTGCAAGAGCAAGGCTTGCTCGCTATA
CTACTCCTGCTGCTAGCTCTTGTGCCGTATTGAACGATCTTTGCGTCGGC
GGGTCGCCAGCTTTCAGTGATCTCGCTGCTTGTGGTGATTTTTTCGACAG
TTTTAGCCAGAATTCATTGGAATTGAATCGAGTTGGGGACATGTATGATT
TTAGCCAAGTCCCATATATGTAATTATCTGTGTTTCTGTTTCCAATCTAG
AATTTAGTTAGACTTATGTGGGAAAATATTGAATTTTATGAATAACTGTG
TGCAGAATCAATGTGCTTTTGCAGGGGAAATGAAACCAAATGATGAACTA
TTGCACTGTTTACTTACTTTAGGCAACAACACAAATACCATACATGGTAC
TAAGACTGAAAGCGTTTGATTTTTGAGTACTCCTCTACTGTAACCCACCA
GCAGTCACATGCTGGTGTACAAAAATCTTTGCCAAATTCCTTGAAACATG
ATCATGATGCNTGTGTGTTTTGTGCCTGTGTGTGTGCGTGTGTGTGCGTG
TTTNTGTTTGCTTGCCCCTTCTGTGGAGTTGTCCATCATTGAAATTGGTC
TTCCAACCGGAAAACAAAGGTTTTGAAATAAT
back to top