EY660087

Overview
NameEY660087
Unique NameEY660087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.618e-26
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 2
Query:    5 ASGGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDE-PKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYTTPAA 364
            +  G    + S C ACK L+RKC   CIFAPYF S++   +FA +HKVFGASNVSK+L  VP   R + V ++AYEA+ARL DPVYGC+  I  LQ+++  LQ  +   +A++A + T AA
Sbjct:    4 SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSAA 124          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.586e-25
Identity = 56/102 (54.90%), Postives = 71/102 (69.61%), Query Frame = 2
Query:   41 CAACKLLKRKCIPTCIFAPYFRSDE-PKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLA 343
            C ACK L+RKC+  C+FAPYF S E    F  VHKVFGASN SK+L  +P  +R D V +L YEA ARLRDPVYGC+G I  LQ +++ LQ +LA  + +L+
Sbjct:   12 CGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLS 113          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.586e-25
Identity = 49/101 (48.51%), Postives = 76/101 (75.25%), Query Frame = 2
Query:   41 CAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLA 343
            CAACK L+R+C   C+F+PYF  ++P+KFA VH+++GA NVSK+L ++P++ R + V SL +EA+ R+ DPVYGC+G I LL+ ++ + Q +LA  +A +A
Sbjct:    6 CAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA 106          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.586e-25
Identity = 49/101 (48.51%), Postives = 76/101 (75.25%), Query Frame = 2
Query:   41 CAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLA 343
            CAACK L+R+C   C+F+PYF  ++P+KFA VH+++GA NVSK+L ++P++ R + V SL +EA+ R+ DPVYGC+G I LL+ ++ + Q +LA  +A +A
Sbjct:    6 CAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEIA 106          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD19_ARATH (LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.772e-24
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 2
Query:   11 GGHEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDE-PKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLA 343
            GG  P     C ACK L+RKC+  C+FAPYF +++   +FA VHKVFGASN SK+L  +P  +R D V +L YEA AR+RDPVYG +G +  LQ +++ LQ +LA  +ARL+
Sbjct:   12 GGEGP-----CGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLS 118          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD14_ARATH (LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.797e-23
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   35 SSCAACKLLKRKCIPTCIFAPYFRSDE-PKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLAR 346
            S C  CK L+RKC+  C+FAPYF  +E    FA +HKVFGASN SK+++ +P+  R D V +++YEA +RL DP+YGC+  I  LQ++++ LQ  + + R   +R
Sbjct:    6 SPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREEASR 110          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.003e-23
Identity = 49/107 (45.79%), Postives = 74/107 (69.16%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDE-PKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLAR 346
            S S C ACK L+RKC   C+FAPYF  ++    FA +HKVFGASN SK+L+ +P   R +   +++YEA+ARL+DP+YGC+  I  LQ++++ LQ +L + + + A+
Sbjct:    8 SGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQ 114          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.987e-22
Identity = 46/102 (45.10%), Postives = 70/102 (68.63%), Query Frame = 2
Query:   29 SSSSCAACKLLKRKCIPTCIFAPYFRSDE-PKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVAR 331
            S S C ACK L+R+C+  C+FAPYF  ++    FA +H+VFGASN SK+L+ +P E R +   ++ YEA+AR +DP+YGC+  I  LQ++++ LQ  L + +
Sbjct:    4 SGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILK 105          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD33_ARATH (LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.781e-22
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   35 SSCAACKLLKRKCIPTCIFAPYFRSDEPKK-FAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARYT 352
            SSC ACK L+RKC   C+F+PYF  ++    FA VHKVFGASNVSK L  +P+ QR     +++YEA +R+RDPVYGC+  I  L ++++ LQ+++    +++  ++
Sbjct:    6 SSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFS 112          
BLAST of EY660087 vs. ExPASy Swiss-Prot
Match: LBD28_ARATH (LOB domain-containing protein 28 OS=Arabidopsis thaliana GN=LBD28 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.172e-20
Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 2
Query:   32 SSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY 349
            S+ CAACK L+RKC   C+FAPYF S +   +  VHKVFGAS+V+ ++  +   QRE  +++LA+EA+ +  DPV GC+G I  L  ++ +L++ LA+ +  LA Y
Sbjct:   10 STPCAACKHLRRKCTEDCVFAPYFPSTKLDNYEAVHKVFGASHVATLINSLHPCQREFAMDTLAWEAQVQANDPVNGCLGIIYNLLSQIKDLEEQLAIVKNELASY 115          
The following BLAST results are available for this feature:
BLAST of EY660087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LBD16_ARATH8.618e-2648.76LOB domain-containing protein 16 OS=Arabidopsis th... [more]
LBD31_ARATH5.586e-2554.90LOB domain-containing protein 31 OS=Arabidopsis th... [more]
LBD24_ARATH5.586e-2548.51LOB domain-containing protein 24 OS=Arabidopsis th... [more]
LBD23_ARATH5.586e-2548.51LOB domain-containing protein 23 OS=Arabidopsis th... [more]
LBD19_ARATH2.772e-2450.89LOB domain-containing protein 19 OS=Arabidopsis th... [more]
LBD14_ARATH1.797e-2345.71LOB domain-containing protein 14 OS=Arabidopsis th... [more]
LBD29_ARATH4.003e-2345.79LOB domain-containing protein 29 OS=Arabidopsis th... [more]
LBD17_ARATH1.987e-2245.10LOB domain-containing protein 17 OS=Arabidopsis th... [more]
LBD33_ARATH5.781e-2244.86LOB domain-containing protein 33 OS=Arabidopsis th... [more]
LBD28_ARATH3.172e-2044.34LOB domain-containing protein 28 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660087 ID=EY660087; Name=EY660087; organism=Citrus sinensis; type=EST; length=932bp
CCACGCGTCCGGGGGACACGAACCTCGGTCAAGCTCATCTTGTGCAGCCT
GCAAGTTACTGAAAAGAAAATGCATTCCCACCTGTATTTTTGCACCTTAT
TTTCGGTCCGATGAGCCGAAGAAATTCGCCAAAGTACACAAGGTGTTTGG
AGCAAGCAATGTGAGCAAGATCCTGACGGAAGTTCCTGAAGAGCAACGCG
AGGACACCGTGAACTCGCTTGCGTATGAAGCTGAGGCTCGGCTTAGAGAC
CCCGTTTATGGGTGCATTGGTGCCATAGCTTTGCTGCAAAGAAAGATGAT
TGAGCTTCAGCAGGATTTGGCCGTTGCAAGAGCAAGGCTTGCTCGCTATA
CTACTCCTGCTGCTAGCTCTTGTGCCGTATTGAACGATCTTTGCGTCGGC
GGGTCGCCAGCTTTCAGTGATCTCGCTGCTTGTGGTGATTTTTTCGACAG
TTTTAGCCAGAATTCATTGGAATTGAATCGAGTTGGGGACATGTATGATT
TTAGCCAAGTCCCATATATGTAATTATCTGTGTTTCTGTTTCCAATCTAG
AATTTAGTTAGACTTATGTGGGAAAATATTGAATTTTATGAATAACTGTG
TGCAGAATCAATGTGCTTTTGCAGGGGAAATGAAACCAAATGATGAACTA
TTGCACTGTTTACTTACTTTAGGCAACAACACAAATACCATACATGGTAC
TAAGACTGAAAGCGTTTGATTTTTGAGTACTCCTCTACTGTAACCCACCA
GCAGTCACATGCTGGTGTACAAAAATCTTTGCCAAATTCCTTGAAACATG
ATCATGATGCNTGTGTGTTTTGTGCCTGTGTGTGTGCGTGTGTGTGCGTG
TTTNTGTTTGCTTGCCCCTTCTGTGGAGTTGTCCATCATTGAAATTGGTC
TTCCAACCGGAAAACAAAGGTTTTGAAATAAT
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