EY660065

Overview
NameEY660065
Unique NameEY660065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY660065 vs. ExPASy Swiss-Prot
Match: PHB_BOVIN (Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.270e-18
Identity = 72/250 (28.80%), Postives = 112/250 (44.80%), Query Frame = 3 
Query:   78 IKVAVIGGLGLYAATHTLYNGQGGHKALMFNPIDDVNDNDYPEVTPLMIPWFEKTVIYDVHALPNLEHSTTGSHDLHMVKIGLTVLTRPEADHLPTIYPTLDQNYDERCLPSIIHETLTTVV*SLQCQPTHHTAL*VGKFARF*LRRQTISTXXXXXXXXXXXXXXXNVHV-PLKLYRLPSKDTQMARSIVERTEHDLIRAIIRALGVCTSAQLIEQ--ASAEPSMYTLTKDASATELLHYLQSSTCVLY 818
            + +AV GG+        LYN   GH+A++F+    V D    E T  +IPW +K +I+D  + P      TGS DL  V I L +L RP A  LP I+ ++ ++YDER LPSI  E L +VV              V +     L  +  +                      ++  ++  ++ + AR +VE+ E     AII A G   +A+LI    A+A   +  L K  +A ++ + L  S  + Y
Sbjct:   14 LALAVAGGV----VNSALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITY 259
The following BLAST results are available for this feature:
BLAST of EY660065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB_BOVIN8.270e-1828.80Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660065 ID=EY660065; Name=EY660065; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGGGAAAAATGTACTTCAACAATGACAAAGTTCCCAAGATG
CCGGGCGGTGGCGCAAACTCTGCTCTAATTAAGGTGGCGGTTATTGGCGG
GCTTGGTTTGTACGCTGCTACTCATACTCTCTACAATGGCCAGGGAGGAC
ATAAGGCCCTTATGTTCAACCCCATAGATGATGTCAATGATAATGATTAT
CCCGAAGTGACACCTCTTATGATTCCATGGTTTGAGAAGACTGTCATCTA
TGATGTTCATGCTCTACCCAACTTAGAGCATAGTACTACTGGTAGCCATG
ATCTTCATATGGTTAAGATTGGGCTTACGGTGCTCACTCGACCTGAGGCT
GACCACTTGCCTACAATTTATCCAACCCTTGATCAGAACTACGATGAAAG
GTGTCTGCCTTCTATCATTCATGAAACTTTAACAACTGTGGTATGATCTC
TACAATGCCAGCCAACTCATCACACAGCACTGTAAGTAGGGAAATTCGCA
AGATTCTGACTGAGAAGGCAGACTATTTCAACATTGCTCTCGATGATGTC
TCCATTACTAGCCTTACTGTTGGCCATGAATGTACATGTGCCATTGAAGC
TATACAGGCTCCCGTCAAAAGATACACAGATGGCTAGATCTATTGTGGAG
AGAACCGAGCACGACTTGATACGTGCTATCATTAGAGCACTCGGAGTATG
CACTAGTGCTCAGCTGATTGAGCAGGCATCTGCAGAACCCAGCATGTATA
CACTGACGAAGGATGCATCAGCTACAGAATTGCTCCACTATCTCCAGTCA
TCAACATGTGTACTCTATGCAATGATCTCTGCTGAACTTCAGGAATTGAG
TGGGTCACAGCCATGAAACATCCATTCTTTNNCTTGGTGGATACTACTTG
AGC
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