EY660056

Overview
NameEY660056
Unique NameEY660056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: SHOC2_NEMVE (Leucine-rich repeat protein soc-2 homolog OS=Nematostella vectensis GN=v1g189306 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 65/227 (28.63%), Postives = 110/227 (48.46%), Query Frame = 1
Query:    1 PRVRGNIPTMHLDGTALEELPSSIECLSK-LSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLP--KLPCNLLSLDAHHCTALESLPGLF----PSSDESYLR 660
            P+    + T  ++   ++++P  +   +K LS L + D   L SLP       SL  L +   + + +LPE++  L  L++L      + ++P  I  L+++R +    NK  S+P    ++ L++L  L L    +  LP S+G LSSVT L +  N    +P+ I  + +LE+L++   E LQSLP   + C  L + +     L +LP       PS    YLR
Sbjct:  337 PKQFCQVNTFIMEHNRMQKIPFGVFNKAKYLSKLNVKD-NQLTSLPLDFGSWISLVELNV-ATNQISKLPEDIQWLVNLEVLILSNNLLKKLPRGIGALRKLRVLDIEENKLESIPT--EIEYLRSLERLVLQSNCLGSLPRSIGYLSSVTYLSVGENELVSVPQEIGNMESLEQLYLNDNENLQSLPYELVLCGSLQIMSIENCPLSALPSQIVAGGPSLVIQYLR 559          
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: LRC40_MOUSE (Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 57/192 (29.69%), Postives = 92/192 (47.92%), Query Frame = 1
Query:   16 NIPTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMEL-PESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSL 588
            N+ T+HL    L  +P   E LS L  L L+  + L ++P+    L SL  L +   + L+ LP E+  ++ L  L      +  VPP +  ++ +  +Y  RNK   LP        + L++L+L +  I +L  E L  L ++  L L GN    +PE +  L +LERL +        +  LPC+L +L
Sbjct:  152 NLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNR-LATVPADFALLSSLLRLNLSS-NQLKNLPAEISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLP---EFPSCRQLKELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSN----NDISSLPCSLGNL 334          
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: LRC40_DANRE (Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 56/190 (29.47%), Postives = 94/190 (49.47%), Query Frame = 1
Query:  103 LADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSN-----------------------LERLFIRYCERLQSLPKLPCNLLSLDAHHC 603
            L     L+S+P  +  L +L VL I   + L  LP+ +G+LE L  L      +TE+P  + RL  +R ++  +N  L   I   +  L NL +L+L++  ++++PESL  L ++  L L  N  + +P +I Q+ N                       LE+L++R+  +L+ LP+LPC   +L   HC
Sbjct:   86 LLSSNKLQSIPDDVKLLPALVVLDIHD-NQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRLTNLRCLHLQQN--LIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLKSLPPAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRH-NKLRYLPELPC-CKTLKELHC 270          

HSP 2 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 55/203 (27.09%), Postives = 94/203 (46.31%), Query Frame = 1
Query:   16 NIPTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLDAHHCTALESLP 624
            N+  +HL    +E++P  +  L  L  L L++   L  +P  L  L++L  L +  C+ L+ LP  +  ++ L +L      +  +PP + +++ +  +Y   NK   LP       L+ L   N N   ++E  E L  L++++ L L  N  + +PE I  L  LERL +        +  LPC L +L      +LE  P
Sbjct:  150 NLRCLHLQQNLIEQIPRDLGQLVNLDELDLSN-NHLIDIPESLANLQNLVKLDLS-CNKLKSLPPAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLPELPCCKTLKELHCGN-NQIEVLEA-EHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTN----NDISSLPCGLGTLPKLKSLSLEGNP 344          
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: SUR8_DROPS (Leucine-rich repeat protein soc-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 60/193 (31.09%), Postives = 99/193 (51.30%), Query Frame = 1
Query:   19 IPTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQ---NLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSL 588
            I  + L  +++  +PS+++    L+ L L   K +  LP+ +  L +L  L ++  ++L  LPE L N + L +L      + E+PP I RL+ +  +Y   N+     IT   D L+   NL  L+L +  I EL  ++G L ++TTL +  N+ E +PE I    NL  L +++ E L  +P    NL SL
Sbjct:  150 IKRLDLSKSSITVIPSTVKECVHLTELYLYSNK-IGQLPAEIGCLVNLRNLALNE-NSLTSLPESLQNCKQLKVLDLRHNKLAEIPPVIYRLRTLTTLYLRFNR-----ITAVADNLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGNCVNLSALDLQHNE-LLDIPDSIGNLKSL 334          
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: SUR8_DROAN (Leucine-rich repeat protein soc-2 homolog OS=Drosophila ananassae GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 60/207 (28.99%), Postives = 108/207 (52.17%), Query Frame = 1
Query:   16 NIPTMHLDGTALEELPSSIECLSK-LSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLP---KLPCNLLSLDAHHCTALESLP 624
            N+ +++L+   ++++P  I   +K L+ L + +   L +LP  +    ++  L +   + LQ+LP+++ NL+ L+IL      + ++P +I  L+R+R +    N+  +LP    +  L  L+ L L    I  LP S+G L ++T L +  NN + +PE I  L +LE L+I     L+ LP    L  NL  L+   C  L ++P
Sbjct:  416 NVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKE-NMLTALPLDIGTWVNMVELNL-ATNALQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRRLRILDLEENRIETLPHEIGL--LHELQRLILQTNQITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELALCQNLKYLNIDKC-PLSTIP 617          

HSP 2 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 69/245 (28.16%), Postives = 115/245 (46.94%), Query Frame = 1
Query:   19 IPTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQ---NLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLD--AHHCTALESLPGLFPSSDESYLRTLYLSDNFKLDRNEIRGIVKGALQKI 738
            I  + L  +++  +PS+++   +++ L L   K +  LP  +  L +L  L ++  ++L  LPE L N   L +L      + E+PP I RL+ +  +Y   N+     IT   D L+   NL  L+L +  I EL  ++G L ++TTL +  N+ E +PE I    NL  L +++ E L  +P    NL SL         L S+P        + L+     D F ++ N I  +  G L  +
Sbjct:  162 IKRLDLSKSSITVIPSTVKDCVQITELYLYSNK-IGQLPPEIGCLVNLRNLALNE-NSLTSLPESLQNCNQLKVLDLRHNKLAEIPPVIYRLRSLTTLYLRFNR-----ITAVADDLRQLVNLTMLSLRENKIRELGSAIGALVNLTTLDVSHNHLEHLPEDIGNCVNLSALDLQHNE-LLDIPDSIGNLKSLVRLGMRYNRLTSVP--------ATLKNCKCMDEFNVEGNGITQLPDGMLASL 390          
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 58/188 (30.85%), Postives = 90/188 (47.87%), Query Frame = 1
Query:   28 MHLDGTALE-ELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSIT-EVPPSIVRLKRVRGIYFGRNK-GLSLPITFSVDGLQNLRDLNLNDCGIM-ELPESLGLLSSVTTLHLEGNNFERI-PESIIQLSNLERLFIRYCERLQSLPKLPCN 576
            +HL G  L  +LP  +  L++L H+ +       ++PS    L +L    +  CS    LP+ELGNL  L+ L       T E+P S   LK ++ + F  N+   S+P  FS   L+NL  L+L    +  E+PE +G L  +TTL L  NNF  + P  +     LE + +       ++P   C+
Sbjct:  206 IHLAGNVLGGKLPPRLGLLTELQHMEIGYNHFNGNIPSEFALLSNLKYFDVSNCSLSGSLPQELGNLSNLETLFLFQNGFTGEIPESYSNLKSLKLLDFSSNQLSGSIPSGFST--LKNLTWLSLISNNLSGEVPEGIGELPELTTLFLWNNNFTGVLPHKLGSNGKLETMDVSNNSFTGTIPSSLCH 391          
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: SHOC2_XENLA (Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 58/191 (30.37%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   19 IPTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLD 591
            I  ++L G  L+ LP+ +  L  L  L L++  SL SLP  L  LK L +L +   + L+ +P  +  L +L  L      IT V   +  L ++  +    NK   LP    +  L NL  L++    +  LP+ +G  + +T L L+ N    +P++I  LS+L RL +RY  RL ++P+       LD
Sbjct:  120 ITELYLYGNKLQSLPAEVGNLVNLVKLALSE-NSLTSLPDSLDNLKKLCMLDLRH-NKLREIPPVVYRLSSLTTLFLRFNRITAVEKDLKMLPKLTMLSIRENKIKHLPA--EIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRY-NRLSAVPRSLSKCSELD 305          
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: LRC39_BOVIN (Leucine-rich repeat-containing protein 39 OS=Bos taurus GN=LRRC39 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 48/167 (28.74%), Postives = 85/167 (50.90%), Query Frame = 1
Query:   16 NIPTMHLDGTALEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNL 516
            N+  + L    + E+P  I  L++L  L L+    +K++P  L    SL+ L +    ++  LP+EL NL  L  L       T +PP+++ +  +  +  G N+   LP T  ++ +QNL  L L    I  LPE++  + +++TL L  N  + IP  + +++NL
Sbjct:  107 NLIVLDLSRNTITEIPRGIGLLTRLQELILS-YNRIKTVPMELSYCASLEKLELAVNRDISDLPQELSNLLKLTHLDLSMNLFTTIPPAVLNMPALEWLDMGSNRLEQLPDT--IERMQNLHTLWLQRNEITCLPETISSMKNLSTLVLSNNKLQDIPVCMEKMTNL 270          
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: SUR8_DROSE (Leucine-rich repeat protein soc-2 homolog OS=Drosophila sechellia GN=Sur-8 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 60/207 (28.99%), Postives = 107/207 (51.69%), Query Frame = 1
Query:   16 NIPTMHLDGTALEELPSSIECLSK-LSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLP---KLPCNLLSLDAHHCTALESLP 624
            N+ +++L+   ++++P  I   +K L+ L + +   L +LP  +    ++  L +   + LQ+LP+++ NL+ L+IL      + ++P +I  L+R+R +    N+   LP    +  L  L+ L L    I  LP S+G L ++T L +  NN + +PE I  L +LE L+I     L+ LP    L  NL  L+   C  L ++P
Sbjct:  419 NVYSINLEHNRIDKIPYGIFSRAKGLTKLNMKE-NMLTALPLDIGTWVNMVELNL-ATNALQKLPDDIMNLQNLEILILSNNMLKKIPNTIGNLRRLRILDLEENRIEVLPHEIGL--LHELQRLILQTNQITMLPRSIGHLGNLTHLSVSENNLQFLPEEIGSLESLENLYINQNPGLEKLPFELALCQNLKYLNIDKC-PLSTIP 620          
BLAST of EY660056 vs. ExPASy Swiss-Prot
Match: LRC30_HUMAN (Leucine-rich repeat-containing protein 30 OS=Homo sapiens GN=LRRC30 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 53/181 (29.28%), Postives = 90/181 (49.72%), Query Frame = 1
Query:   49 LEELPSSIECLSKLSHLGLADCKSLKSLPSGLCKLKSLDVLIIDGCSNLQRLPEELGNLEALDILHAIGTSITEVPPSIVRLKRVRGIYFGRNKGLSLPITFSVDGLQNLRDLNLNDCGIMELPESLGLLSSVTTLHLEGNNFERIPESIIQLSNLERLFIRYCERLQSLPKLPCNLLSLD 591
            + ++P  +  LS++  L L+    L+ LP  + KL  + VL + G + L+ LP E+  L+ L +L      +TEVP  +   +++  +    N    LP  F+   L  LR LNL++     +P  +  L  +  LH+  N  E I ESI  L++L+ +FI     + S P+  C + SL+
Sbjct:   60 MTDIPDFLWGLSEVQKLNLSH-NQLRVLPPEVGKLTRIVVLNLCG-NRLKSLPREVSLLQCLKVLFVNMNCLTEVPAELSLCRKLEVLSLSHNCLSQLPACFA--DLSRLRKLNLSNNFFAHIPMCVFSLKELIFLHVGSNRLENIAESIQHLASLQ-IFIAEGNNIHSFPRSLCLVTSLE 235          
The following BLAST results are available for this feature:
BLAST of EY660056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SHOC2_NEMVE3.073e-1128.63Leucine-rich repeat protein soc-2 homolog OS=Nemat... [more]
LRC40_MOUSE3.073e-1129.69Leucine-rich repeat-containing protein 40 OS=Mus m... [more]
LRC40_DANRE3.073e-1129.47Leucine-rich repeat-containing protein 40 OS=Danio... [more]
SUR8_DROPS4.013e-1131.09Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
SUR8_DROAN4.013e-1128.99Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
Y5148_ARATH6.845e-1130.85Probable leucine-rich repeat receptor-like protein... [more]
SHOC2_XENLA6.845e-1130.37Leucine-rich repeat protein SHOC-2 OS=Xenopus laev... [more]
LRC39_BOVIN6.845e-1128.74Leucine-rich repeat-containing protein 39 OS=Bos t... [more]
SUR8_DROSE8.940e-1128.99Leucine-rich repeat protein soc-2 homolog OS=Droso... [more]
LRC30_HUMAN8.940e-1129.28Leucine-rich repeat-containing protein 30 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-018-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660056 ID=EY660056; Name=EY660056; organism=Citrus sinensis; type=EST; length=854bp
CCACGCGTCCGCGGTAATATACCAACGATGCATTTAGATGGAACTGCACT
GGAGGAACTGCCTTCGTCCATCGAGTGTCTATCTAAGCTTTCGCACTTGG
GCCTTGCAGATTGTAAAAGTCTCAAGAGTCTCCCAAGCGGCCTGTGTAAG
TTGAAATCTCTAGATGTTCTCATTATCGATGGTTGCTCGAATCTTCAGAG
ATTGCCCGAGGAACTTGGAAATTTAGAAGCTTTGGATATTTTGCACGCTA
TAGGAACTTCTATAACAGAAGTACCGCCATCCATCGTCCGTTTGAAAAGG
GTTCGTGGAATATATTTCGGGAGAAACAAGGGTTTATCATTGCCAATCAC
ATTCTCTGTAGATGGCTTGCAAAATCTAAGGGATTTAAATCTAAATGATT
GCGGCATCATGGAGTTACCTGAAAGTCTTGGCCTGTTATCCTCAGTAACA
ACACTGCATCTAGAGGGAAACAATTTTGAGAGAATACCAGAAAGCATCAT
ACAACTTTCTAATTTGGAAAGGCTCTTCATAAGGTATTGCGAGAGGCTTC
AATCCTTACCAAAGCTTCCATGCAATCTACTTTCGTTGGATGCACATCAT
TGCACCGCACTGGAATCATTACCAGGTTTATTCCCAAGTAGTGATGAATC
TTATTTACGGACTTTATACCTGAGCGATAATTTTAAATTGGATCGGAATG
AGATTAGAGGAATTGTCAAAGGAGCTCTGCAGAAAATTCACTTTTGGCAA
CCGCACGTCTAAGAGAGCACGGGAAAAGTATGTCGTTAATTACTCTCCTT
TTATTTAGAAAGAGCTAAAGAAAAGATGACAGAATGACAATACGCGGTGG
TGGT
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