EY660046

Overview
NameEY660046
Unique NameEY660046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7629 contig Csv1_Contig7629:1..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY660046 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.150e-51
Identity = 108/249 (43.37%), Postives = 158/249 (63.45%), Query Frame = 2 
Query:   92 SKSKILFFARTGYIGKFIVEASAKAGHPTFVLVRESTLSDPSKSQLLDHFKKLGVNLVIGDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSIHDLVPLWERKIGKTLQRVYVSEEQVL 832
            +K++ L    TG+IG+FI +AS   G+PTF+LVR   +S PSK+ ++  F+  G  ++ G + + E + K +K+  +DVVIS VG   L DQ+ ++ AIK    IKRF PSEFG+DVDR   VEP  + +  K  +RRAVE  GIP+T +  N  A++   +   P    PP D+  I GDGN KA +   +DIG +T+K +DD RTLNK ++ +P  N YSI++L  LWE+KIG+TL R  V+ +++L
Sbjct:   11 TKNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRPSSNCYSINELASLWEKKIGRTLPRFTVTADKLL 258
The following BLAST results are available for this feature:
BLAST of EY660046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN1.150e-5143.37Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-H11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660046 ID=EY660046; Name=EY660046; organism=Citrus sinensis; type=EST; length=904bp
ATGGACGCCTGAGGACCGGTCCGGAATNNCTCATCACCCGCGCGNNNGGA
AAGATCTGGCAAAAAAAAGTGAATAATTCTCGGTAATGGCGTCGAAAAGC
AAGATTCTATTTTTCGCCCGTACAGGGTACATCGGCAAATTCATCGTCGA
AGCGAGCGCGAAAGCCGGCCACCCGACGTTCGTGCTCGTGAGAGAATCCA
CACTCTCCGATCCTTCCAAATCTCAGCTCCTCGATCACTTCAAAAAACTC
GGCGTCAATCTCGTCATCGGAGATGTGTTGAATCACGAGAGCTTGGTGAA
GGCGATAAAACAAGTGGACGTGGTGATATCAACGGTCGGTCACACTTTAT
TAGGTGATCAGGTCAAGATCATTGCGGCCATTAAAGAAGCTGGTAACATT
AAGAGATTCTTCCCTTCAGAATTTGGGAATGATGTTGATCGAGTCCATGC
CGTTGAGCCAGCAAAATCAGCATTTGCCACAAAGGCAAAAATCCGCCGAG
CCGTTGAGGCTGAAGGGATTCCGTATACTTATGTAGCGTCGAATTTCTTT
GCTGCTTACTTCCTTCCCAATTTGTCGCAGCCCGGGGCCACTGCCCCACC
TAGGGATAAAGTTGTCATCTTAGGCGATGGAAATCCAAAAGCTGTTTATA
ACAAGGAAGATGATATTGGAACCTATACTATCAAAGCGGTTGATGATCCC
AGAACCTTGAACAAAATCCTTTACATTAAACCCCCTGGTAATATTTACTC
CATTCATGATCTTGTGCCCTTGTGGGAGAGAAAGATTGGCAAAACCCTCC
AAAGGGTGTACGTTTCGGAGGAGCAAGTCCTTAAGATATTCAAGAAGCTG
CACCTCCAGGTCATGTGATATATCAATTCACACTCTGCCTTCGTGGAGGG
AGAT
back to top