EY660036

Overview
NameEY660036
Unique NameEY660036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY660036_ssr245 microsatellite EY660036_ssr245:245..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.466e-27
Identity = 81/229 (35.37%), Postives = 120/229 (52.40%), Query Frame = 2
Query:  185 PATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRD--ELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXY----KNSGRAPFQ*TNPWGCIRRCGKQMTGHQKWSREIDWSKLLFMLLRDFDIEACPVLNHKLG-LNPSNWGEANNIQPS 844
            P  F E     + + +L +    R+++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    V+D  ELD EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+ ++H Y+ILW    I+F+VDDVPIR      + +G  P +  + +  I       T   K+  +  +S  +    +D  ++ C V +   G  N +N G  NNI  S
Sbjct:   37 PIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDASSWATSGGKFGVDYTFSPFV-SEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCS 264          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.323e-27
Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 2
Query:  191 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRXYKNS 628
            T+  ++  TW    L  I     +QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIR Y  +
Sbjct:   23 TWGNNYYQTWGHQAL-VINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKN 165          
BLAST of EY660036 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.966e-12
Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  197 LEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVD 598
            LEDF  T S     +   G  +  +  + +G    S R +L+G+ S+++K     S G VTAF +   T  + DE+DFE+LG   G   T Q+N Y+ G  D  R QR  +  D  A YH Y I W+   I++YVD
Sbjct:  148 LEDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTAR--SRGVVTAFDL---TSAIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVD 275          
The following BLAST results are available for this feature:
BLAST of EY660036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH29_ARATH5.466e-2735.37Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH9.323e-2743.15Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRR1_YEAST4.966e-1236.03Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660036 ID=EY660036; Name=EY660036; organism=Citrus sinensis; type=EST; length=877bp
TTCTCAACCCACGCGTCCGCTCGGCATATTTACCACAACATATAATTAAA
GTTCTCTTTCTAATTAGTAACAGATAATATTTTATTGTACGGCTTGTTTT
ACAGCTATGGCTATCCTAAGAAATGCAATAGCATTATTTGTGTTGCTTTA
CTGTCTTGTATCCTGCTCTTGCGTTTTAGGGCGACCGGCTACTTTTCTTG
AGGATTTTAAAGTCACATGGTCCGATGCCCATCTCAGGCAAATCGAGGGA
GGGAGGGCCATCCAGCTAGTTCTAGACCAAAATTCAGGATGTGGGTTTGC
TTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGCATGAAGATCAAGCTCG
TTCCTGGAGACTCTGCTGGAACTGTCACTGCATTTTATATGAATTCCAAC
ACCGAAAATGTGAGAGACGAGCTTGATTTTGAGTTCCTGGGAAACCGAAC
GGGTCAGCCTTACACGGTCCAGACCAATATCTATGCAAATGGAAAAGGCG
ATAGAGAACAGAGAGTGAACCTCTGGTTTGACCCTGCTGCAGATTATCAC
CTTTACACTATTCTCTGGAACCATCACCATATTGTCTTCTATGTGGATGA
TGTGCCCATCAGGNNTTACAAAAACAGTGGAAGGGCTCCATTTCAATGAA
CCAACCCATGGGGGTGTATCCGACGCTGTGGGAAGCAGATGACTGGGCAC
CAGAAGTGGTCTAGAGAAATAGATTGGAGCAAGCTCCTTTTTATGCTATT
ACGAGACTTTGATATTGAGGCCTGCCCAGTCCTGAACCACAAACTGGGCC
TCAACCCAAGTAACTGGGGGGAAGCAAATAATATCCAACCCTCCCGCCAT
GGAAGCAAAAAAACAAATGGGTCGCCT
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