EY660003

Overview
NameEY660003
Unique NameEY660003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.153e-22
Identity = 57/130 (43.85%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:  352 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNGYSREE 735
            +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D IKEE+L+  D+  + HL++ LHVL+E   P G   SR+ HA+  ++  L P  +  D +++  LREL+ LNG    E
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNGSDDSE 185
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.721e-22
Identity = 55/125 (44.00%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:  352 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNG 720
            +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL++ LHVL+E   P G   SR+ HA+  ++  L P  +  D +++  LREL+ LNG
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNG 180
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.721e-22
Identity = 55/125 (44.00%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:  352 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNG 720
            +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL++ LHVL+E   P G   SR+ HA+  ++  L P  +  D +++  LREL+ LNG
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNG 180
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.721e-22
Identity = 55/125 (44.00%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:  352 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNG 720
            +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL++ LHVL+E   P G   SR+ HA+  ++  L P  +  D +++  LREL+ LNG
Sbjct:   58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNG 180
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.839e-21
Identity = 54/125 (43.20%), Postives = 82/125 (65.60%), Query Frame = 1 
Query:  352 VKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNG 720
            +K   R+ +PV +YP FNFVG++LGPRGNS+KR++  T  ++ I G+GS++D  KEE+L+   +  Y HL+  LHVL+E   P G   SR+ HA+  ++  L P  +  D +++  LREL+ LNG
Sbjct:   58 IKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQEQLRELSYLNG 180
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.558e-19
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:  376 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNGYS 726
            +PV ++P FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HLN+ LHVL+E   P     +R+ HA+  ++  L P  +  D +++  L+EL  LNG S
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLNGGS 178
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR3_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.558e-19
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:  376 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNGYS 726
            +PV ++P FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HLN+ LHVL+E   P     +R+ HA+  ++  L P  +  D +++  L+EL  LNG S
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNGGS 178
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR3_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.558e-19
Identity = 51/119 (42.86%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:  376 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNGYS 726
            +PV ++P FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HLN+ LHVL+E   P     +R+ HA+  ++  L P  +  D +++  L+EL  LNG S
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLNGGS 178
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.116e-17
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1 
Query:  367 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNG 720
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P     + + HA+  ++  L P  + +D + +    EL+ LNG
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
[Close]
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.116e-17
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1 
Query:  367 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNG 720
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P     + + HA+  ++  L P  + +D + +    EL+ LNG
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276
The following BLAST results are available for this feature:
BLAST of EY660003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
KHDR2_XENTR1.153e-2243.85KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_RAT5.721e-2244.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_MOUSE5.721e-2244.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_HUMAN5.721e-2244.00KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_DANRE2.839e-2143.20KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_RAT1.558e-1942.86KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_MOUSE1.558e-1942.86KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_HUMAN1.558e-1942.86KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_RAT1.116e-1739.17KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_MOUSE1.116e-1739.17KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660003 ID=EY660003; Name=EY660003; organism=Citrus sinensis; type=EST; length=924bp
CTAAAAAAGGCGTNNGNTTTGNCTTTTGCCGTAAAAGGGATTTGGNTGAA
TTATTGGCAGAAAGGCAAAAGTTAGGACCATTTGTCCACGCTTTTGCCTC
TATGCAGCAGGCTTCTCAGTCAAGAAATCAGACGAATAACGGGTTACAAT
CCAAGTTTTGTTGATCATGAAAGGTTTGAGCATGATAGCCCATTTAGGTC
ATTAGGTCAGCCAAATGGAAGACCAATGGATTTGGAGGGTTTGTCTGCAA
TGCAAACTGAGGAAAATGGGCACCTTCAAAGAATGGCCCCTTTTCAAACT
CCTCCTTCAATGGGCTGGCAAGGTATTCCTGGAATTCCAACCACACCTGT
TGTAAAGAGAGTTATTAGACTTGATGTTCCTGTGGATAAATATCCAAATT
TTAATTTTGTCGGCCGGATTTTGGGACCGCGTGGGAACTCGCTCAAAAGA
GTCGAAGCCATGACAGAATGTAGGGTGTTCATTAGAGGCCGGGGTTCAGT
CAAGGATTCAATAAAGGAAGAAAAACTTAAAGATAAACCTGGATATGAGC
ATCTTAATGAGCCACTGCACGTGTTAGTGGAGGCCGAATTTCCAGATGGA
TATATAAATTCCCGCTTGGATCATGCTGTAGCAATACTAGAGAACCTTTT
GAAGCCCGTGGATGAATCCTTGGATCATTTACAGAAGGNAACACTGCGGG
AATTAGCTATGCTGAACGGGTACTCTAGAGAAGAAAGCCCAAGCATGAGT
CCGAGTATGAGTCCTAANATGTCGCCCTTTAACATGCTGGGATGAACGCG
CCCNGACCGGAAGATACATGGTATACCTATCATGATGAAATGAACCTTGA
TGAACACTGAATCCTGCAACTGAGGAATGCTGCCTGAAAACCTCATTGGT
TTGGTCTTCAAACCTTGGGAGGGA
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