EY660003

Overview
NameEY660003
Unique NameEY660003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.116e-17
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  367 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNG 720
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P     + + HA+  ++  L P  + +D + +    EL+ LNG
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 276          
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.116e-17
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  367 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNG 720
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E   P     + + HA+  ++  L P  + +D + +    EL+ LNG
Sbjct:  142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELSYLNG 259          
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.750e-16
Identity = 48/123 (39.02%), Postives = 76/123 (61.79%), Query Frame = 1
Query:  376 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENL-LKPV--DESLDHLQKXTLRELAMLNGYSREE 735
            +PVD+YP+ NFVG +LGPRG +L++++  + C++ IRGRGSVK+      L   PG  +  +PLH L+ A+  D     ++   + + +N+ +K V   E  + L++  LRELA LNG  RE+
Sbjct:  154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIADSED-----KIQKGIKVCQNIVIKAVTSPEGQNDLKRGQLRELAELNGTLRED 269          
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: BBP_DICDI (Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.365e-15
Identity = 54/152 (35.53%), Postives = 86/152 (56.58%), Query Frame = 1
Query:  277 QRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNGYSRE 732
            Q++ P   PPS  +Q        P  K+  ++ +P+  +P +NF+G I+GPRGN+ KR+E  +  ++ IRG+GS +D  K  KL+ +      N+ LHVL+ A+  D     +LD A  ++   L PV+E  +  ++  LRELA +NG  RE
Sbjct:  160 QQINPTYKPPS-DYQ-------PPNEKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRDG-KPTKLQFQE-----NDELHVLLTADTVD-----QLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEMNGTLRE 292          
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4)

HSP 1 Score: 83.1889 bits (204), Expect = 2.328e-15
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  337 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLK---PVDESLDHLQKXTLRELAMLNGYSREE 735
            P T V  +V+   +P D+YP  NFVG ++GPRGN+LK +E     ++ IRG+GSVK+   +   KD       +EPLH LV A   +      +  AV  + N+LK      E  + L+K  LRELA LNG  RE+
Sbjct:  132 PATRVSDKVM---IPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEG--KVGRKDGQMLPGEDEPLHALVTANTME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRED 257          
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: BBP_SCHPO (Branchpoint-bridging protein OS=Schizosaccharomyces pombe GN=bpb1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.971e-15
Identity = 47/124 (37.90%), Postives = 77/124 (62.10%), Query Frame = 1
Query:  376 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYE-HLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLK---PVDESLDHLQKXTLRELAMLNGYSREE 735
            VPV  YP  NF+G ++GPRG++LK +EA +  ++ IRG+GSV    KE K +  P    ++ E LH LV A+  D     +++HA+ +++N+++    V E  + L++  LR+LA LNG  R++
Sbjct:  192 VPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSV----KEGKGRSDPSVRGNMEEDLHCLVTADSED-----KINHAIKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGTLRDD 306          
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5)

HSP 1 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  337 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLK---PVDESLDHLQKXTLRELAMLNGYSREE 735
            P T V  +V+   +P D+YP  NFVG ++GPRGN+LK +E     ++ IRG+GSV++   +   KD       +EPLH LV A   +      +  AV  + N+LK      E  + L+K  LRELA LNG  RE+
Sbjct:  132 PATRVSDKVM---IPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVEEG--KVGRKDGQMLPGEDEPLHALVTANTME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLRED 257          
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: BBP_ASHGO (Branchpoint-bridging protein OS=Ashbya gossypii GN=BBP PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.773e-15
Identity = 46/121 (38.02%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  376 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKP-GYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDESLDHLQKXTLRELAMLNGYSREE 735
            +P++ YP  NFVG +LGPRGN+LK+++  + C++ IRGRGSVK+    +   D P G  ++NEPLH ++ A+  +            I++ +  P  E  +  ++  LRELA+LNG  RE+
Sbjct:  155 IPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKEG---KAATDLPKGAMNMNEPLHCVISADTEEKIPLGINAGESIIIKAITFP--EGQNDFKRGQLRELAVLNGTLRED 270          
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: GRP33_ARTSA (Glycine-rich protein GRP33 OS=Artemia salina PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.509e-14
Identity = 41/134 (30.60%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  271 HLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPG--YEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENLLKPVDE 666
            H++  +  +T P+    G   +     VK V R  +PVD++P +NF+G++LGP G+++K+++  T  ++ I GRGS++D  KEE+L++     Y HLNE LH+ + +       ++R+ +A+  ++  + P ++
Sbjct:   45 HIKTGSRPKTVPNTDGSGFMDLYNDTKVKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLNEQLHIEIISIASPAEAHARMAYALTEIKKYITPEED 178          
BLAST of EY660003 vs. ExPASy Swiss-Prot
Match: BBP_CANGA (Branchpoint-bridging protein OS=Candida glabrata GN=BBP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.509e-14
Identity = 46/123 (37.40%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  376 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPDGYINSRLDHAVAILENL-LKPV--DESLDHLQKXTLRELAMLNGYSREE 735
            +PV +YP  NFVG +LGPRG +L++++  + C++ IRGRGSVK+      L   PG    ++PLH L+ A+  +     ++++ +    N+ +K V   E  + L++  LRELA LNG  RE+
Sbjct:  140 IPVSQYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDL--PPGAMDFSDPLHCLIIADNEE-----KIENGIKACRNIVIKAVTSPEGQNELKRGQLRELAELNGTLRED 255          
The following BLAST results are available for this feature:
BLAST of EY660003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
KHDR1_HUMAN1.116e-1739.17KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_CHICK1.116e-1739.17KH domain-containing, RNA-binding, signal transduc... [more]
BBP_YEAST2.750e-1639.02Branchpoint-bridging protein OS=Saccharomyces cere... [more]
BBP_DICDI1.365e-1535.53Branchpoint-bridging protein OS=Dictyostelium disc... [more]
SF01_HUMAN2.328e-1539.71Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4[more]
BBP_SCHPO3.971e-1537.90Branchpoint-bridging protein OS=Schizosaccharomyce... [more]
SF01_MOUSE6.773e-1538.97Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5[more]
BBP_ASHGO6.773e-1538.02Branchpoint-bridging protein OS=Ashbya gossypii GN... [more]
GRP33_ARTSA1.509e-1430.60Glycine-rich protein GRP33 OS=Artemia salina PE=2 ... [more]
BBP_CANGA1.509e-1437.40Branchpoint-bridging protein OS=Candida glabrata G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY660003 ID=EY660003; Name=EY660003; organism=Citrus sinensis; type=EST; length=924bp
CTAAAAAAGGCGTNNGNTTTGNCTTTTGCCGTAAAAGGGATTTGGNTGAA
TTATTGGCAGAAAGGCAAAAGTTAGGACCATTTGTCCACGCTTTTGCCTC
TATGCAGCAGGCTTCTCAGTCAAGAAATCAGACGAATAACGGGTTACAAT
CCAAGTTTTGTTGATCATGAAAGGTTTGAGCATGATAGCCCATTTAGGTC
ATTAGGTCAGCCAAATGGAAGACCAATGGATTTGGAGGGTTTGTCTGCAA
TGCAAACTGAGGAAAATGGGCACCTTCAAAGAATGGCCCCTTTTCAAACT
CCTCCTTCAATGGGCTGGCAAGGTATTCCTGGAATTCCAACCACACCTGT
TGTAAAGAGAGTTATTAGACTTGATGTTCCTGTGGATAAATATCCAAATT
TTAATTTTGTCGGCCGGATTTTGGGACCGCGTGGGAACTCGCTCAAAAGA
GTCGAAGCCATGACAGAATGTAGGGTGTTCATTAGAGGCCGGGGTTCAGT
CAAGGATTCAATAAAGGAAGAAAAACTTAAAGATAAACCTGGATATGAGC
ATCTTAATGAGCCACTGCACGTGTTAGTGGAGGCCGAATTTCCAGATGGA
TATATAAATTCCCGCTTGGATCATGCTGTAGCAATACTAGAGAACCTTTT
GAAGCCCGTGGATGAATCCTTGGATCATTTACAGAAGGNAACACTGCGGG
AATTAGCTATGCTGAACGGGTACTCTAGAGAAGAAAGCCCAAGCATGAGT
CCGAGTATGAGTCCTAANATGTCGCCCTTTAACATGCTGGGATGAACGCG
CCCNGACCGGAAGATACATGGTATACCTATCATGATGAAATGAACCTTGA
TGAACACTGAATCCTGCAACTGAGGAATGCTGCCTGAAAACCTCATTGGT
TTGGTCTTCAAACCTTGGGAGGGA
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