EY659996

Overview
NameEY659996
Unique NameEY659996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.867e-16
Identity = 38/72 (52.78%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  368 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV 583
            PDDF CPISLE+M+DPV +S+G TY+R  I KW   G+STCPKT + L S  L  N VL+ +I  W   N +
Sbjct:  257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVLRSLIAQWCEANDI 328          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.342e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  368 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWS 568
            P  F CPISL++MK PV+LSTG TYDR SI +W   GN+TCP T + LQ+KE + NL L R+I  WS
Sbjct:   12 PCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQNKEFVPNLTLHRLIDHWS 78          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB26_ARATH (U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  353 LGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDN 577
            LG   P  F CPISL++M DPVT+STG TYDR SI  W   GN+TCP T   L    L+ N  L+R+IQ+W V N
Sbjct:   10 LGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDFTLIPNHTLRRLIQEWCVAN 84          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB11_ARATH (U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.289e-15
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 2
Query:  368 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAEESGHKN 613
            P DF CP+SLE+MKDPV ++TG TY+RA I +W   GN TCPKT ++L++  L  N VL+ +I  W  ++  +I + +G+ N
Sbjct:  242 PVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAEH--NIEQPAGYIN 321          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.989e-15
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  368 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWS 568
            P  F CPISL++MK PV+L TG TYDRASI +W   GN+TCP T + LQ+K+ + N  L+R+I+ WS
Sbjct:   11 PTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKDFIPNRTLQRLIEIWS 77          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.099e-15
Identity = 62/222 (27.93%), Postives = 99/222 (44.59%), Query Frame = 2
Query:   29 FDTDPDDKRVLNDVIRILG---RFQDGIRPDKSEV-KRVLDYLGITKWSQCNQEVKFLDSEITIEYLNVDKRSELALLSSLMGFLSYCKCIMFDLVD----------------------NEASQQVSK------KCCNNMLGG---LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSI 589
            F  DP +K V + +I +L    +F +G    + E+  +    L IT       E + L   I    +  DKR E  +   L     Y K    +++D                      N   +Q+SK      K  N+   G   + P++  CPISL++M DPV +++G TY+R  I KWF  G+++CPKT ++L    L  N  +K +I  W   NG+++
Sbjct:  128 FLLDPSEKEVGDRIIALLQQGKKFDNGSDSTELEIFHQAATRLSITSSRSALAERRALKKVIDRARVEEDKRKESIVAYLLHLMRKYSKLFRSEMMDENDSPCSTPCSPTGQGPNEDRVNAFGRQLSKFGSINYKPMNSRKSGQMPIPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNSCPKTQQQLPHLSLTPNYCVKGLIASWCEQNGITV 349          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.099e-15
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  368 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWS 568
            P  F CPISL++M+ PV+L TG TYDRASI +W   GN+TCP T + L++K+ + NL L+R+I  WS
Sbjct:   13 PSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFVPNLTLQRLINIWS 79          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.099e-15
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  362 LTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV 583
            + P++F CPISLE+M DPV +S+G TY+R  I KW   G+ TCPKT E L S  +  N VL+ +I  W   NG+
Sbjct:  255 IPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSLIAQWCESNGI 328          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.531e-14
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  368 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNG 580
            P +F CPIS+++MKDPV +STG TYDR SI  W  +GN TCP T   L + + + N  ++++IQ W V+ G
Sbjct:   32 PPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIPNHTIRKMIQGWCVEKG 102          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.305e-14
Identity = 41/76 (53.95%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  353 LGGLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAG-NSTCPKTGERLQSKELLVNLVLKRIIQDWSVDN 577
            LG   P  F CPISLE+M+DPVT+ TG TYDRASI  W   G N+TCP T   L    L+ N  L+R+IQ+W V N
Sbjct:   10 LGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDFTLIPNHTLRRLIQEWCVAN 85          
The following BLAST results are available for this feature:
BLAST of EY659996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PUB13_ARATH7.867e-1652.78U-box domain-containing protein 13 OS=Arabidopsis ... [more]
PUB28_ARATH1.342e-1558.21U-box domain-containing protein 28 OS=Arabidopsis ... [more]
PUB26_ARATH2.289e-1553.33U-box domain-containing protein 26 OS=Arabidopsis ... [more]
PUB11_ARATH2.289e-1546.34U-box domain-containing protein 11 OS=Arabidopsis ... [more]
PUB27_ARATH2.989e-1555.22U-box domain-containing protein 27 OS=Arabidopsis ... [more]
PUB6_ARATH5.099e-1527.93U-box domain-containing protein 6 OS=Arabidopsis t... [more]
PUB29_ARATH5.099e-1553.73U-box domain-containing protein 29 OS=Arabidopsis ... [more]
PUB12_ARATH5.099e-1548.65U-box domain-containing protein 12 OS=Arabidopsis ... [more]
PUB21_ARATH2.531e-1447.89U-box domain-containing protein 21 OS=Arabidopsis ... [more]
PUB25_ARATH3.305e-1453.95U-box domain-containing protein 25 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659996 ID=EY659996; Name=EY659996; organism=Citrus sinensis; type=EST; length=910bp
TTCTAACAACCCACGCGTCCGAGCAATATTTGACACTGACCCAGATGATA
AACGGGTCTTAAATGATGTGATCCGGATCTTGGGTCGGTTCCAGGATGGG
ATTCGCCCGGATAAGAGTGAAGTAAAACGGGTTTTGGATTATCTTGGGAT
CACAAAATGGAGTCAGTGCAATCAGGAGGTCAAGTTCTTGGATTCAGAAA
TTACTATTGAGTACTTGAATGTAGATAAAAGAAGCGAATTGGCACTTTTG
AGTAGTCTAATGGGGTTCTTGAGCTACTGCAAATGTATAATGTTTGATCT
TGTTGACAATGAAGCTAGTCAACAAGTTAGCAAGAAGTGTTGCAACAATA
TGCTTGGTGGCTTAACCCCAGATGATTTTACGTGTCCAATTTCTTTGGAG
ATCATGAAAGATCCAGTGACATTATCCACTGGGCATACTTATGATCGAGC
TTCCATCTTGAAATGGTTTAGAGCTGGGAATTCTACTTGTCCCAAGACAG
GTGAGAGGCTACAAAGTAAGGAGTTGCTGGTTAATTTGGTTCTTAAGAGG
ATCATTCAGGATTGGTCTGTTGATAACGGAGTTTCTATTGCTGAAGAATC
AGGTCACAAGAATCGGGATATTANCAGGACGGTTCTTGCAGGNNAGTTGG
CAGCTGAAGGAGCTATGAAATTGTTAGCTAATTTTATTTCTGACAGGCTT
CTGGNAGGGACTAGTGAAGAAAAGACAAAGTAGCTTATGAGGGTCGGCTT
CTCACAAATCTAGCATTTTACAAGTCTGGTTGGGGGGAATTTGGTGCATT
CCAAGTTATTGAACTTTTGCATCAAAGATTCTCAACTCAGAGATGCTATG
CTGCTTGTTGATCTGNCAAACCTGCAAGCAAAACTTGGAAGGGAAAGGGA
GGATTAATTT
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