EY659996

Overview
NameEY659996
Unique NameEY659996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB42_ARATH (Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.619e-11
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  377 FTCPISLEIMKDPVTLSTGHTYDRASILKWFRA-GNS---TCPKTGERLQSKELLVNLVLKRIIQDWSVDN 577
            F CP++ EIM+DPVT  TG T +R ++++WF + GNS    CP TG++L + EL  N+VLK IIQ+W V N
Sbjct:  250 FICPLTKEIMEDPVTTETGVTCERQAVIEWFDSFGNSDEINCPVTGQKL-TTELSANVVLKTIIQEWKVRN 319          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB5_ARATH (U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.420e-11
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  359 GLTPDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGVSIAE 595
            G  P+ F C +S  +M DPV +S+G+T++R  I KWF  GN +CP +  +L    L  N+ LK  I +W   NG+ + +
Sbjct:  179 GTLPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDEGNDSCPISKRKLDDFTLKPNVELKSQISEWCAKNGLDVQD 257          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB54_ARATH (U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.420e-11
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 2
Query:  371 DDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDN 577
            +DF CPIS+EIM+DP   + G TY+     KW R+G  T PKT + L++  L+ N  L+ II+DW   N
Sbjct:  235 EDFKCPISMEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHTLRIIIKDWLEKN 303          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: PUB24_ARATH (U-box domain-containing protein 24 OS=Arabidopsis thaliana GN=PUB24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.420e-11
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  368 PDDFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQ-SKELLVNLVLKRIIQDWSVDN 577
            P+ F CPISLEIMKDPVT  +G TYDR +I+KW     S CP T + L    +L  N +L+R+IQ W V+N
Sbjct:   11 PNYFICPISLEIMKDPVTTVSGITYDRQNIVKWLEKVPS-CPVTKQPLPLDSDLTPNHMLRRLIQHWCVEN 80          
BLAST of EY659996 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.620e-11
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  374 DFTCPISLEIMKDPVTLSTGHTYDRASILKWFRAGNSTCPKTGERLQSKELLVNLVLKRIIQDWSVDNGV 583
            +F CPIS EIM+ PV    G TY++++ILKWF    ST P T E++ SK++  N VLK II+DW  +N V
Sbjct:  682 EFLCPISHEIMEHPVVAKDGFTYEKSNILKWFE-NKSTSPMTNEKI-SKKICDNKVLKSIIRDWKENNTV 749          
The following BLAST results are available for this feature:
BLAST of EY659996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PUB42_ARATH2.619e-1150.70Putative U-box domain-containing protein 42 OS=Ara... [more]
PUB5_ARATH3.420e-1137.97U-box domain-containing protein 5 OS=Arabidopsis t... [more]
PUB54_ARATH3.420e-1144.93U-box domain-containing protein 54 OS=Arabidopsis ... [more]
PUB24_ARATH3.420e-1152.11U-box domain-containing protein 24 OS=Arabidopsis ... [more]
UBC4_MIMIV7.620e-1150.00Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659996 ID=EY659996; Name=EY659996; organism=Citrus sinensis; type=EST; length=910bp
TTCTAACAACCCACGCGTCCGAGCAATATTTGACACTGACCCAGATGATA
AACGGGTCTTAAATGATGTGATCCGGATCTTGGGTCGGTTCCAGGATGGG
ATTCGCCCGGATAAGAGTGAAGTAAAACGGGTTTTGGATTATCTTGGGAT
CACAAAATGGAGTCAGTGCAATCAGGAGGTCAAGTTCTTGGATTCAGAAA
TTACTATTGAGTACTTGAATGTAGATAAAAGAAGCGAATTGGCACTTTTG
AGTAGTCTAATGGGGTTCTTGAGCTACTGCAAATGTATAATGTTTGATCT
TGTTGACAATGAAGCTAGTCAACAAGTTAGCAAGAAGTGTTGCAACAATA
TGCTTGGTGGCTTAACCCCAGATGATTTTACGTGTCCAATTTCTTTGGAG
ATCATGAAAGATCCAGTGACATTATCCACTGGGCATACTTATGATCGAGC
TTCCATCTTGAAATGGTTTAGAGCTGGGAATTCTACTTGTCCCAAGACAG
GTGAGAGGCTACAAAGTAAGGAGTTGCTGGTTAATTTGGTTCTTAAGAGG
ATCATTCAGGATTGGTCTGTTGATAACGGAGTTTCTATTGCTGAAGAATC
AGGTCACAAGAATCGGGATATTANCAGGACGGTTCTTGCAGGNNAGTTGG
CAGCTGAAGGAGCTATGAAATTGTTAGCTAATTTTATTTCTGACAGGCTT
CTGGNAGGGACTAGTGAAGAAAAGACAAAGTAGCTTATGAGGGTCGGCTT
CTCACAAATCTAGCATTTTACAAGTCTGGTTGGGGGGAATTTGGTGCATT
CCAAGTTATTGAACTTTTGCATCAAAGATTCTCAACTCAGAGATGCTATG
CTGCTTGTTGATCTGNCAAACCTGCAAGCAAAACTTGGAAGGGAAAGGGA
GGATTAATTT
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