EY659994

Overview
NameEY659994
Unique NameEY659994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.124e-26
Identity = 63/186 (33.87%), Postives = 103/186 (55.38%), Query Frame = 2
Query:   29 ISNIPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 583
            ++ + NG+++ASE S      + L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N Q ++ + +H+  Y   AL   +L P   I  +N   L +++  +Y GPR+VLAA+G
Sbjct:   61 VTCLENGLRVASEDSGLATCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAG 246          
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 6.180e-26
Identity = 62/186 (33.33%), Postives = 103/186 (55.38%), Query Frame = 2
Query:   29 ISNIPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 583
            ++ + NG+++ASE S      + L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N Q ++ + +H+  Y   AL   +L P   I  ++   L +++  +Y GPR+VLAA+G
Sbjct:   60 VTCLENGLRVASENSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAG 245          
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: QCR1_RAT (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Rattus norvegicus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.072e-26
Identity = 61/186 (32.80%), Postives = 110/186 (59.14%), Query Frame = 2
Query:   29 ISNIPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 583
            +S + NG+++ASE S  P   + +++  GS YE+  + G  + LE +AF+ T+NR    + +EVE+IG ++ A ++RE   Y   AL   +P++VELL D V+N    D ++ ++   +  E+ E   + Q+++ + +H+  + G  LA  +  P   + RL+ T L ++++ +Y  PRMVLAA+G
Sbjct:   50 VSVLDNGLRVASEQSSHPTCTVGVWIDVGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNISLEDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLSRHYKAPRMVLAAAG 235          
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.703e-26
Identity = 61/187 (32.62%), Postives = 102/187 (54.55%), Query Frame = 2
Query:   29 ISNIPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASGV 586
            +S++ NG+K+A+  +    + + LY+  GS +E     G TH+L+R+AF+ST +     +   +E +GGN Q ++SRE + Y        V +M++L+ + VR P   + E+ EQ    + EI EV   P+ +L E +H+A YSG  L +PL+ P   I  ++   L ++  + YT    V A  GV
Sbjct:   21 LSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRELIPSISKYYLLDYRNKFYTPENTVAAFVGV 207          

HSP 2 Score: 29.6462 bits (65), Expect = 8.703e-26
Identity = 27/91 (29.67%), Postives = 40/91 (43.96%), Query Frame = 1
Query:  589 HDQLVSVAEPLLSDLPSIHPR-EEPQSVYTGSDYRCQADSG-----GQLTHFCLAFDLPGGWHKDKDAMTLTVSDAFGKEGIILAGGPGKG 843
            H++ + + E  L D  S HP   +  + YTG +  C   +       +L H  + F+     H D  A+  T+    G  G   AGGPGKG
Sbjct:  209 HEKALELTEKYLGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALA-TLQTLLGGGGSFSAGGPGKG 297          
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: QCR1_MOUSE (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Mus musculus GN=Uqcrc1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 61/186 (32.80%), Postives = 108/186 (58.06%), Query Frame = 2
Query:   29 ISNIPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 583
            +S + NG+++ASE S      + +++  GS YE+  + G  + LE +AF+ T+NR    + +EVE+IG ++ A ++RE   Y   AL   +P++VELL D V+N    D ++ ++   +  E+ E   + Q+++ + +H+  + G  LA  +  P   + RL+ T L +++  NY  PRMVLAA+G
Sbjct:   50 VSILDNGLRVASEQSSHATCTVGVWIDAGSRYETEKNNGAGYFLEHLAFKGTKNRPGNALEKEVESIGAHLNAYSTREHTAYLIKALSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREMQENDASMQNVVFDYLHATAFQGTPLAQAVEGPSENVRRLSRTDLTDYLNRNYKAPRMVLAAAG 235          
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.067e-25
Identity = 61/186 (32.80%), Postives = 103/186 (55.38%), Query Frame = 2
Query:   29 ISNIPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 583
            ++ + +G+++ASE S      + L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N Q ++ + +H+  Y   AL   +L P   I  ++   L +++  +Y GPR+VLAA+G
Sbjct:   60 VTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAG 245          
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.067e-25
Identity = 61/186 (32.80%), Postives = 103/186 (55.38%), Query Frame = 2
Query:   29 ISNIPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 583
            ++ + +G+++ASE S      + L++  GS YE+  + GT H LE MAF+ T+ RS L +  E+E +G ++ A  SREQ  Y   A    +P  VE+L D ++N    + E+  +   +  E+ EV  N Q ++ + +H+  Y   AL   +L P   I  ++   L +++  +Y GPR+VLAA+G
Sbjct:   60 VTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAG 245          
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.232e-25
Identity = 60/187 (32.09%), Postives = 104/187 (55.61%), Query Frame = 2
Query:   29 ISNIPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 583
            I+ + NG+++A+E +   VA + ++V  GS+YE+  + G  H LE M F+ T  R +   I  E+E +GG++ A  SRE   Y    LK  VP  V++L D ++N  F    + ++   + SE   + +    ++ + +H+A + G AL   +L P   I  +    ++EF+ ENYTG R+V++A+G
Sbjct:   37 ITTLSNGIRVATEQTYGEVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFETSLIEQERDTILSENDYIQSKEDEVVFDQLHAAAFQGSALGRTILGPVENIKSITREQIQEFINENYTGDRLVISAAG 223          
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: QCR1_EUGGR (Ubiquinol-cytochrome-c reductase complex core protein I, mitochondrial OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.527e-24
Identity = 62/197 (31.47%), Postives = 102/197 (51.78%), Query Frame = 2
Query:   26 TISN-IPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAP-ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VDMTSWC 604
            T+ N +PNG +IASE+       + +++  GS +E+  + G  H LE M F+ T  RS   I   +E +G ++ A  SRE   Y     K  VPE V++L D + N    + +++ +   +  E  +V      +L++ +HSA + G+ L   +L P E+    +   ++++FV  +YTGPRM L  SG VD    C
Sbjct:   27 TLQNALPNGFRIASESKDGDTCTVGVWIDAGSRWETEKNNGVAHFLEHMNFKGTGKRSRQDIEFGMEKMGAHLNAYTSREHTCYYVKCFKKDVPEAVDILADILLNSKRTEQDLDAERQTIVQEKEDVEARIDEVLMDHLHSAAFEGSGLGLSILGPLENIQKSITKGMIDDFVKTHYTGPRMALVGSGAVDHGQLC 223          

HSP 2 Score: 32.7278 bits (73), Expect = 4.527e-24
Identity = 19/59 (32.20%), Postives = 27/59 (45.76%), Query Frame = 1
Query:  589 HDQLVSVAEPLLSDLPSIHPREEPQSVYTGSDYRCQADSGGQLTHFCLAFDLPGGWHKD 765
            H QL  +A      LP+  P+    + + G D R + +    LTH  +AF  PG  H D
Sbjct:  219 HGQLCDLASKYFGALPTGQPKPSGFTRFLGGDKR-ETNQLNPLTHVAVAFQTPGISHPD 276          
BLAST of EY659994 vs. ExPASy Swiss-Prot
Match: QCR1_HUMAN (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Homo sapiens GN=UQCRC1 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.749e-23
Identity = 57/186 (30.65%), Postives = 106/186 (56.99%), Query Frame = 2
Query:   29 ISNIPNGVKIASETSVSPVAPISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 583
            +S + NG+++ASE S  P   + +++  GS +E+  + G  + LE +AF+ T+NR    + +EVE++G ++ A ++RE   Y   AL   +P+ VELL D V+N    D ++ ++   +  E+ E   + + ++   +H+  + G  LA  +  P   + +L+   L E+++ +Y  PRMVLAA+G
Sbjct:   50 VSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAG 235          
The following BLAST results are available for this feature:
BLAST of EY659994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
MPPB_BOVIN2.124e-2633.87Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_RAT6.180e-2633.33Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_RAT8.072e-2632.80Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPA_YEAST8.703e-2632.62Mitochondrial-processing peptidase subunit alpha O... [more]
QCR1_MOUSE1.798e-2532.80Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPB_PONAB3.067e-2532.80Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN3.067e-2532.80Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI5.232e-2532.09Mitochondrial-processing peptidase subunit beta OS... [more]
QCR1_EUGGR4.527e-2431.47Ubiquinol-cytochrome-c reductase complex core prot... [more]
QCR1_HUMAN3.749e-2330.65Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659994 ID=EY659994; Name=EY659994; organism=Citrus sinensis; type=EST; length=891bp
TCATCAAACGGGCGTCCGGTAAAACACTATCTCTAATATACCAAATGGTG
TCAAAATTGCCTCGGAAACATCAGTGAGTCCTGTAGCCCCAATATCGTTA
TATGTTGGTTGTGGTTCAATTTATGAGTCACCAATCTCATTTGGGACAAC
ACACTTGCTTGAGCGTATGGCTTTTAGAAGTACAAGAAATAGGAGTCACT
TGCGTATTGTGCGAGAAGTGGAGGCAATTGGTGGCAATGTCCAAGCCTCA
GCTTCTAGGGAGCAGATGGGTTACTCCTTTGATGCTTTGAAAACTTATGT
TCCTGAAATGGTAGAGCTTCTTATTGACTGTGTGAGAAACCCTGTTTTTC
TGGATTGGGAGGTCAACGAACAGCTCACAAAGGTGAAATCTGAGATTAGT
GAGGTTTCCAACAATCCTCAAAGCTTGCTTTTGGAGGCAATTCACTCAGC
TGGTTACTCTGGTGCATTGGCTAATCCTCTTCTAGCCCCGGAATCTGCTA
TAAATAGATTAAACTCTACACTTCTCGAAGAATTTGTTGCTGAAAATTAT
ACTGGTCCTCGGATGGTACTTGCTGCTTCTGGTGTTGACATGACCAGTTG
GTGTCTGTAGCAGAACCACTTTTATCTGACCTACCCAGTATCCATCCTCG
CGAAGAGCCCCAATCTGTGTACACTGGGAGTGATTATCGTTGTCAAGCTG
ATTCAGGGGGACAGTTAACCCATTTTTGTCTTGCATTTGACCTTCCTGGN
GGGTGGCATAAGGATAAGGATGCCATGACTTTGACAGTCTCAGATGCTTT
TGGGAAGGAGGGGATCATTCTCGCTGGGGGCCCTGGAAAAGGATGCACTA
AAGCTGATTCCCCNGGGGTTGATGAGTCCCCCAAGTCAGGC
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