EY659993

Overview
NameEY659993
Unique NameEY659993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659993 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 45/159 (28.30%), Postives = 76/159 (47.80%), Query Frame = 1
Query:   67 YSLKNGRRAHQVPRVK-LGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKMQVATKFXXXXXXXXXXXXXXXPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 540
            YS + G    Q+   + LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+VY     EV+LG  +K+    +  +                     ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G
Sbjct:   25 YSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG 180          
BLAST of EY659993 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 45/159 (28.30%), Postives = 76/159 (47.80%), Query Frame = 1
Query:   67 YSLKNGRRAHQVPRVK-LGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKMQVATKFXXXXXXXXXXXXXXXPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 540
            YS + G    Q+   + LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+VY     EV+LG  +K+    +  +                     ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G
Sbjct:   25 YSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG 180          
BLAST of EY659993 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 45/159 (28.30%), Postives = 76/159 (47.80%), Query Frame = 1
Query:   67 YSLKNGRRAHQVPRVK-LGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKMQVATKFXXXXXXXXXXXXXXXPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 540
            YS + G    Q+   + LG  GL VS LG G     GG    +++E    ++  A+  GI  FDTA+VY     EV+LG  +K+    +  +                     ++    +ASL+RL ++Y+D+ + +R D + P+EET+  M  ++ +G
Sbjct:   25 YSTRYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQ---ITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMTHVINQG 180          
BLAST of EY659993 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 48/185 (25.95%), Postives = 86/185 (46.49%), Query Frame = 1
Query:   10 QVKVNHLFLLKDIETKKPNYSLKNGRRAHQ--------VPRVKLGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKMQVATKFXXXXXXXXXXXXXXXPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 540
            Q++   L LL+++E    N+ LK    + +        +P   LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+VY     EV+LG  +K+    +  +                     ++    + SL+RL ++Y+D+ + +R D++ P+EE +  M  ++ +G
Sbjct:   54 QLRARQLALLREVEM---NWYLKLCDLSSEHTTVCTTGMPHRNLGKSGLRVSCLGLGTWVTFGGQ---ISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQG 232          
BLAST of EY659993 vs. ExPASy Swiss-Prot
Match: KCAB1_CHICK (Voltage-gated potassium channel subunit beta-1 OS=Gallus gallus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.588e-11
Identity = 41/142 (28.87%), Postives = 67/142 (47.18%), Query Frame = 1
Query:  115 LGTQGLEVSKLGYGCMNLSGGYSSPVSEEDGISMIKHAFSKGITFFDTADVYGQNANEVLLGKALKQLPREKMQVATKFXXXXXXXXXXXXXXXPDYVRSCCEASLKRLDVDYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 540
            LG  GL VS LG G     GG    +S+E    ++  A+  G+  FDTA+VY     EV+LG  LK+    +  +                     ++     ASL+RL ++Y+D+ + +R D + P+EE +  M  ++ +G
Sbjct:   76 LGKSGLRVSCLGLGTWVTFGGQ---ISDEVAEQLMTIAYESGVNLFDTAEVYAAGKAEVILGNILKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLRASLQRLQLEYVDVVFANRPDNNTPMEEIVRAMTHVINQG 214          
The following BLAST results are available for this feature:
BLAST of EY659993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
KCAB2_BOVIN1.233e-1128.30Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT1.611e-1128.30Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE1.611e-1128.30Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_HUMAN1.611e-1125.95Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_CHICK3.588e-1128.87Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659993 ID=EY659993; Name=EY659993; organism=Citrus sinensis; type=EST; length=944bp
TTCAGAAAGCAAGTTAAAGTCAACCATCTTTTTCTATTGAAAGACATTGA
AACAAAGAAGCCAAACTACAGCCTCAAAAATGGCAGAAGAGCCCACCAAG
TTCCAAGAGTGAAATTGGGTACCCAAGGCCTTGAGGTTTCAAAATTGGGT
TATGGATGCATGAACCTGAGTGGAGGTTATAGCTCTCCAGTCTCAGAAGA
GGATGGCATATCAATGATAAAGCATGCTTTCAGTAAAGGAATCACTTTCT
TTGATACTGCTGATGTGTACGGACAAAATGCTAATGAAGTTCTTCTTGGA
AAGGCCTTGAAGCAGTTGCCTAGAGAAAAGATGCAAGTAGCAACAAAGTT
TGGGATTGCAGGAATAGGAGTTGCTGGTGTGATCGTGAAGGGTGCCCCTG
ATTATGTGCGCTCGTGTTGTGAAGCTAGCTTGAAGCGCCTTGATGTGGAT
TACATTGATCTATATTATCAACATAGAGTGGACACATCAGTCCCCATAGA
GGAAACCATTGGCGAAATGAAGAAGCTGGTGGAAGAGGGTAAATCAAGTA
CATTGGATTATCTGAGGCCAGCCCAGGCACAATTAGGAGAGCACATGCTG
TTCATCCCATCACAGCTGTACAAATGGAATGGTCCCTCTGGACTCGTGAT
ATTGAGGAAAGAGATATACCCCTCTGCAGGNAACTCNGTATTNGGAATAG
TCCATACAGTCCTCTGGGTCGGGGAATTTTCNNGTGGCAAGCTGGTGTTG
GAGAATGTACCTGCAGATAGCTTTTTGCATTTTCTTCCCTAGGTCAAAGA
AGAGACCTGGACGGGACCAGAATATTTATTTTCGCATAGAGAACTTGCCA
AAAAGTAAAATGCACCTCTGCTCAACTACCCTAGATGGGTTCCCGAAAAG
GGGATGGATGCTTACCTATCCCGGGAAACTAAGTGAAAACCTGT
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