EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.030e-63
Identity = 127/242 (52.48%), Postives = 161/242 (66.53%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFA-TNKSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + N +SEGYPG RYYGG E+ID  E+LCQKRAL+A++LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++N  TGYI+YDQLE++A LF                  +   + A  N +Y +  MAH+  +      P  FE+   VTTT   T  G
Sbjct:   20 KMLAQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRG 261          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 6.750e-63
Identity = 124/229 (54.15%), Postives = 159/229 (69.43%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK-SYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            +E +DPE+ +I+++EK+RQ +GLELI SENFTS +VM A+GS M N +SEGYPGARYYGGNE+ID  E LCQKRALE F LDP KWGVNVQSLSGSP+NF VYTAL+  + RIM LDLP GGHL+HG+ T  +K+SA S FF++MPY+++  +G IDYD+LE++A LF                    F + AT   +Y +  MAH+  +      P  FE +D VTTT
Sbjct:   56 VEKIDPEVFNIMKNEKSRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMEILCQKRALEVFGLDPAKWGVNVQSLSGSPANFAVYTALVGANGRIMGLDLPDGGHLTHGFFTPARKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTT 284          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 8.815e-63
Identity = 124/229 (54.15%), Postives = 158/229 (69.00%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK-SYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            +E VDPE+ DI+++EK RQ +GLELI SENFTS +VM A+GS M N +SEGYPGARYYGGNE+ID  E LCQKRALE F LDP KWGVNVQ LSGSP+NF VYTA++  + RIM LDLP GGHL+HG+ T  +K+SA S FF+++PY+++ +TG IDYD+LE++A LF                    F + AT   +Y +  MAH+  +      P  FE +D VTTT
Sbjct:   52 VEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTT 280          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 2.565e-62
Identity = 126/242 (52.07%), Postives = 159/242 (65.70%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFA-TNKSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            K L+ PL+  D E+  II+ E  RQ  GLELI SENF S +V++A+GS + N +SEGYPG RYYGG E+ID  E LCQKRAL+A+ LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++   TGYI+YDQLE++A+LF                  +   + A  N +Y +  MAH+  +      P  FE+   VTTT   T  G
Sbjct:   14 KMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRG 255          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.375e-62
Identity = 125/242 (51.65%), Postives = 159/242 (65.70%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFA-TNKSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            K L  PL+  D E+ +II+ E  RQ  GLEL  SENF S +V++A+GS + N +SEGYPG RYYGG E+ID  E+LCQKRAL+A++LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ T  KKISA SIFFE+MPY++N  TGYI+YDQLE++A LF                  +   + A  N +Y +  MAH+  +      P  FE+   VTTT   T  G
Sbjct:   20 KMLAQPLKDSDVEVYNIIKKESNRQRVGLELFASENFASQAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTGKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLDYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRG 261          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 7.463e-62
Identity = 126/242 (52.07%), Postives = 158/242 (65.29%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFA-TNKSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            + L  PL+  D E+ DII+ E  RQ  GLELI SENF S +V++A+GS + N +SEGYPG RYYGG E+ID  E+LCQKRAL+A+ LDP+ WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N  TGYIDYD+LE++A LF                      + A  N +Y +  MAH+  +      P  FE+   VTTT   T  G
Sbjct:   20 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRG 261          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 9.746e-62
Identity = 126/242 (52.07%), Postives = 158/242 (65.29%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFA-TNKSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + N +SEGYPG RYYGG E+ID  E LCQKRAL+ + LDPE WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++N  TGYI+YDQLE++A LF                  +   + A  N +Y +  MAH+  +      P  FE+   V+TT   T  G
Sbjct:   20 KMLAQPLKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRG 261          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 1.273e-61
Identity = 126/238 (52.94%), Postives = 156/238 (65.55%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK----------SYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            L+  DPE+  II+ E  RQ   + LI SENFT+ +V  A+G+ M N +SEGYPGARYYGGNE+I   E LCQ+RAL+AF L P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M LDLPHGGHLSHGYQTD++KISAVS +FETMPYR++  TG IDYD LEK+A L+                  S + R    K          +Y V  MAH+  +      P  FE AD VTTT
Sbjct:   18 LKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGGNEHIHRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPHGGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAG---------TSAYCRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTT 246          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 2.401e-60
Identity = 124/242 (51.24%), Postives = 157/242 (64.88%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFA-TNKSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + N +SEGYPG RYYGG E+ID  E LCQKRAL+ + LD + WGVNVQ  SGSP+NF VYTAL++PH RIM LDLP GGHL+HG+ TD KKISA SIFFE+MPY++N  TGYI+YDQLE++A LF                  +   + A  N +Y +  MAH+  +      P  FE+   V+TT   T  G
Sbjct:   20 KMLAQPLKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRG 261          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 6.985e-60
Identity = 123/241 (51.04%), Postives = 155/241 (64.32%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN----------KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DPE+ ++++ EK RQ +GLELI SENF S + ++A+GS + N +SEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N  VYTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN  TG IDY+QL  +A LF                  S +AR              K++ +  MAH+  +      P  F++AD VTTT   T  G
Sbjct:   53 DPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG---------TSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRG 284          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_HUMAN3.030e-6352.48Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_CAEBR6.750e-6354.15Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEEL8.815e-6354.15Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_MOUSE2.565e-6252.07Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_PONAB4.375e-6251.65Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_RABIT7.463e-6252.07Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_SHEEP9.746e-6252.07Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_CANAL1.273e-6152.94Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_BOVIN2.401e-6051.24Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYM_HUMAN6.985e-6051.04Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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