EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DEIRA (Serine hydroxymethyltransferase OS=Deinococcus radiodurans GN=glyA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.749e-33
Identity = 71/166 (42.77%), Postives = 100/166 (60.24%), Query Frame = 2
Query:  224 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            P  V D  + D+I  E  RQ  GLELI SENFTS +V +A GSV+TN ++EGYPG R+YGG E +D  E L   R  + F  +   W  NVQ  SGS +N  VY AL++P D ++ +DL HGGHL+HG      K +   + ++ + Y+L+  T  ID +++ + A
Sbjct:    7 PQAVRDDAVFDLIAQEAERQRTGLELIASENFTSAAVREAQGSVLTNKYAEGYPGKRWYGGCEVVDQVEQLAIDRVKQLFNAE---W-ANVQPHSGSSANLAVYNALIQPGDTVLGMDLSHGGHLTHG-----NKANFSGMRYQMVAYQLDRETERIDMEEVRRLA 163          

HSP 2 Score: 31.187 bits (69), Expect = 3.749e-33
Identity = 12/30 (40.00%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  721 HPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            H    K+I+AGASAY+R+ D+   R++ ++
Sbjct:  164 HEHKPKMIIAGASAYSRVIDFAAFREIADE 193          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_THEAB (Serine hydroxymethyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.267e-33
Identity = 89/232 (38.36%), Postives = 120/232 (51.72%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DPEI D+I  E  RQ  GLELI SENF S++V++A+GSV+TN ++EGYPG RYYGG E++D+AE L + RA E F +       NVQ  SGS +N   Y A+ +P D IM + L HGGHL+HG       ++     +  +PY +N  T  IDYD++   A                       F   A    +Y +  MAH   +     +P   E A  VT+T   T  G
Sbjct:    9 DPEIYDVILKEWERQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQANMGAYFAVSEPGDTIMGMSLSHGGHLTHG-----ASVNFSGRIYNVVPYGVNPETEVIDYDEVRDLALKHKPKIIVAGGSAYSRIIDFKKFREIADEVGAYLIVDMAHFAGLVAAGIYPNPAEYAHIVTSTTHKTLRG 231          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_METMA (Serine hydroxymethyltransferase OS=Methanosarcina mazei GN=glyA PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 4.267e-33
Identity = 89/236 (37.71%), Postives = 126/236 (53.39%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            +E +DPE+ + I++E  RQ   L LI SEN+ S +VM+A GS+MTN ++EGY G RYYGG +++D+AE+L   RA E F        VNVQ  SGS +N  VY ++L+P D I+++DL HGGHLSHG       +S     +  +PY +++ T  +DYD+L K A                       F   A    +Y +  +AH+  +     HP     AD VTTT   T  G
Sbjct:    4 IEKIDPELFEAIKNEADRQEHKLNLIASENYASRAVMEAQGSIMTNKYAEGYSGKRYYGGCDFVDVAENLAIARAKELFGAK----YVNVQPHSGSGANMAVYFSVLQPGDTILSMDLSHGGHLSHG-----SPVSFSGKLYNIVPYGVSKETEALDYDELLKLAKECKPRMIVCGASAYPRVIDFKRFREIADEVGAYLLADIAHIAGLVVAGVHPSPVPYADFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_METAC (Serine hydroxymethyltransferase OS=Methanosarcina acetivorans GN=glyA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.267e-33
Identity = 89/236 (37.71%), Postives = 125/236 (52.97%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            +E +DP++ + I+ E  RQ   L LI SEN+ S +VM+A GS+MTN ++EGY G RYYGG +++D+AE+L   RA E F        VNVQ  SGS +N  VY ++L+P D IM++DL HGGHLSHG       +S     +  +PY +++ T  +DYD+L K A                       F   A    +Y +  +AH+  +     HP     AD VTTT   T  G
Sbjct:    4 IEKIDPDMFEAIQKEADRQEHKLNLIASENYASRAVMEAQGSIMTNKYAEGYSGKRYYGGCDFVDIAENLAIARAKEIFGAK----YVNVQPHSGSGANMAVYFSVLQPGDTIMSMDLSHGGHLSHG-----SPVSFSGKLYNIVPYGVSKETEALDYDELMKMAKECKPKMIVCGASAYPRVIDFKKFREIADEVGAYLLADIAHIAGLVVSGVHPSPVPYADFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA1_AGRT5 (Serine hydroxymethyltransferase 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=glyA1 PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.879e-33
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 2
Query:  224 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            PL  VDP+I   IE E  RQ   +ELI SEN  S +V++A GS+MTN ++EGYPG RYYGG +++D+AE L  +RA + F ++      NVQ  SGS  N  V+ ALL+P D  M LDL  GGHL+HG       ++    +F  + Y + E    +D D++E+ A
Sbjct:   11 PLAEVDPDIFGAIEKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYAEGYPGKRYYGGCQFVDIAEELAIERAKKLFGVN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTHG-----SPVNMSGKWFNVVSYGVREGDNLLDMDEVERKA 167          

HSP 2 Score: 32.3426 bits (72), Expect = 4.879e-33
Identity = 13/35 (37.14%), Postives = 24/35 (68.57%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            V  K      KLI+AG +AY+R++D++R R++ ++
Sbjct:  163 VERKAKETRPKLILAGGTAYSRVWDWKRFREIADE 197          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_THENN (Serine hydroxymethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.573e-33
Identity = 90/233 (38.63%), Postives = 122/233 (52.36%), Query Frame = 2
Query:  236 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            VDPEI +++ +E  RQ  GLELI SENF S++V++ +GSV+TN ++EGYPG RYYGG E++D AE L  +RA + F  +      NVQ  SGS +N  VY AL +P D IM + L HGGHL+HG       ++     F+ + Y +N  T  IDYD++ K A                       F   A    +Y +  MAH   +     HP   E A  VT+T   T  G
Sbjct:    8 VDPEIYEVLVNELRRQEYGLELIASENFASLAVIETMGSVLTNKYAEGYPGRRYYGGCEWVDRAEELAIERAKKLFGAE----FANVQPHSGSQANMAVYLALAQPGDTIMGMSLSHGGHLTHG-----APVNFSGRIFKVVHYGVNLETETIDYDEVRKLALEHRPKIIVAGGSAYARTIDFKRFREIADEVGAYLMVDMAHFAGLVAAGIHPNPVEYAHVVTSTTHKTLRG 231          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_STRMK (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain K279a) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.573e-33
Identity = 92/236 (38.98%), Postives = 124/236 (52.54%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            +E  DPE+A  I  E  RQ   +ELI SEN+TS +VM+A GS +TN ++EGYPG RYYGG EY+D+AE L   R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++A    F  + Y +N+  G IDYD++E+ A                     + F   A    +Y    MAH+  +     +P   E+A  VT+T   T  G
Sbjct:    8 IESYDPELAKAIAAETQRQEDHVELIASENYTSPAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDIAEQLAIDRLKQLFGAD----YANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----AKVNASGKLFNAVQYGVNDQ-GLIDYDEVERLALEHKPKMVVAGFSAYSQVIDWARFRAIADKVGAYLFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRG 233          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_STRM5 (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.573e-33
Identity = 92/236 (38.98%), Postives = 124/236 (52.54%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            +E  DPE+A  I  E  RQ   +ELI SEN+TS +VM+A GS +TN ++EGYPG RYYGG EY+D+AE L   R  + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++A    F  + Y +N+  G IDYD++E+ A                     + F   A    +Y    MAH+  +     +P   E+A  VT+T   T  G
Sbjct:    8 IESYDPELAKAIAAETQRQEDHVELIASENYTSPAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDIAEQLAIDRLKQLFGAD----YANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----AKVNASGKLFNAVQYGVNDQ-GLIDYDEVERLALEHKPKMVVAGFSAYSQVIDWARFRAIADKVGAYLFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRG 233          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_GEOLS (Serine hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.573e-33
Identity = 87/236 (36.86%), Postives = 122/236 (51.69%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYNV-GRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            L   DP +A+ I+HE  RQ   LELI SENF S +V++A GSVMTN ++EGYPG RYYGG  ++D+ E+L  +RA E F  +      NVQ  +GS +N  VY A+ +P D I+ ++L HGGHL+HG       ++    F+  +PY ++  T  IDY+++E+ A                       F   A      V   MAH+  +     HP     A+ VTTT   T  G
Sbjct:    4 LSQFDPAVAEAIQHETERQEYNLELIASENFVSEAVLEAQGSVMTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAE----HANVQPHAGSQANMAVYNAVCQPGDTILGMNLSHGGHLTHG-----SPVNFSGRFYNVVPYGVSPDTETIDYNEVERLALEHKPKMIVVGASAYPRIIDFPAFRAIADKVGAKVMVDMAHIAGLVAAGVHPNPVPYAEFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA1_BORBR (Serine hydroxymethyltransferase 1 OS=Bordetella bronchiseptica GN=glyA1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.354e-33
Identity = 74/166 (44.58%), Postives = 101/166 (60.84%), Query Frame = 2
Query:  224 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            PL   DPEI   ++ E+ RQ   +ELI SENF S +V+ A GSVMTN ++EGYPG RYYGG  ++D+AE    +RA   F  +      NVQ  SGS +N  VY ALL P DRI+ LDL  GGHL+HG       ++    +FE + Y ++  +  ID D++E++A
Sbjct:   18 PLRHADPEIWRAVDAERQRQMHSIELIASENFVSQAVLDAQGSVMTNKYAEGYPGRRYYGGCRHVDVAERAAIERARRLFGCE----YANVQPHSGSQANQAVYLALLAPGDRILGLDLKAGGHLTHG-----AHVNLSGKWFEALSYGVDPVSHRIDMDEVERTA 174          

HSP 2 Score: 30.0314 bits (66), Expect = 6.354e-33
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            +LI+AG SAYAR+ D+ R R + +
Sbjct:  180 RLIIAGGSAYARVPDFARFRAIAD 203          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DEIRA3.749e-3342.77Serine hydroxymethyltransferase OS=Deinococcus rad... [more]
GLYA_THEAB4.267e-3338.36Serine hydroxymethyltransferase OS=Thermosipho afr... [more]
GLYA_METMA4.267e-3337.71Serine hydroxymethyltransferase OS=Methanosarcina ... [more]
GLYA_METAC4.267e-3337.71Serine hydroxymethyltransferase OS=Methanosarcina ... [more]
GLYA1_AGRT54.879e-3343.37Serine hydroxymethyltransferase 1 OS=Agrobacterium... [more]
GLYA_THENN5.573e-3338.63Serine hydroxymethyltransferase OS=Thermotoga neap... [more]
GLYA_STRMK5.573e-3338.98Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_STRM55.573e-3338.98Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_GEOLS5.573e-3336.86Serine hydroxymethyltransferase OS=Geobacter lovle... [more]
GLYA1_BORBR6.354e-3344.58Serine hydroxymethyltransferase 1 OS=Bordetella br... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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