EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.985e-60
Identity = 122/244 (50.00%), Postives = 155/244 (63.52%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK----------SYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            K ++  L   DPE+  II+ E  RQ   ++LI SENFT+ SV  A+G+ + N +SEGYPGARYYGGNE+ID  E LCQ+RALEAF + P++WGVNVQ+LSGSP+N QVY AL+KPH+R+M L LP GGHLSHGY T+ +KISAVS +FE+ PYR+N  TG IDYD LEK+A L+                  S + R    K          +Y +  MAH+  +      P  FE AD VTTT
Sbjct:   11 KMVSGHLSETDPEVEQIIKDEVDRQKHSIDLIASENFTTTSVFDALGTPLCNKYSEGYPGARYYGGNEHIDRIERLCQQRALEAFHVTPDRWGVNVQTLSGSPANLQVYQALMKPHERLMGLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKILVAG---------TSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLVAAGVIPSPFEYADIVTTT 245          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 9.122e-60
Identity = 123/241 (51.04%), Postives = 153/241 (63.49%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN----------KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DPE+ +++  EK RQ +GLELI SENF S + ++A+GS + N +SEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K+ISA SIFFE+MPY+LN  TG IDYDQL  +A LF                  S +AR              K++ +  MAH+  +      P  F++AD VTTT   T  G
Sbjct:   53 DPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAG---------TSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRG 284          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.556e-59
Identity = 119/234 (50.85%), Postives = 155/234 (66.24%), Query Frame = 2
Query:  215 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFA-TNKSYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            L+  ++  DPE+ DI+  E++RQ + + LIPSENFTSV+VM  +GS M N +SEGYPG RYYGGN+YIDMAESLCQKRALE + LDP KWGVNVQSLSG+P+N   Y+A+++  DR+M LDLPHGGHLSHGYQ     KIS +S +F+TM YR++ +TG +DYD L +++ LF                    F   A    +Y +  MAH+  +     HP  FE +D VTTT
Sbjct:   36 LSQHVQEFDPEMYDILTKERSRQKRSITLIPSENFTSVAVMNLLGSEMQNKYSEGYPGQRYYGGNQYIDMAESLCQKRALELYGLDPAKWGVNVQSLSGAPANLYAYSAIMEVGDRMMGLDLPHGGHLSHGYQLQNGNKISYISKYFQTMAYRVDPATGLVDYDTLSETSKLFRPKVIVAGTSAYARVLDYKRFREIADACGAYLLSDMAHVSGLVAAGVHPSPFEYSDIVTTT 269          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.032e-59
Identity = 123/244 (50.41%), Postives = 156/244 (63.93%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK----------SYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            K +++ L   DPE+  II+ E  RQ   + LI SEN TS +V  A+G+ M N +SEGYPGARYYGGN++ID  E LCQ+RALEAF + P++WGVNVQSLSGSP+N QVY AL+KPH+R+M L LP GGHLSHGYQT+T+KISAVS +FE+ PYR++  TG IDYD LEK+A L+                  S + R    K          +Y +  MAH+  +      P  FE AD VTTT
Sbjct:   11 KLISSHLSESDPEVDAIIKDEIDRQKHSIVLIASENLTSTAVFDALGTPMCNKYSEGYPGARYYGGNQHIDRMELLCQRRALEAFHVTPDRWGVNVQSLSGSPANLQVYQALMKPHERLMGLHLPDGGHLSHGYQTETRKISAVSTYFESFPYRVDPETGIIDYDTLEKNAVLYRPKILVAG---------TSAYCRLIDYKRMREIADKVGAYLMVDMAHISGLVAAGVIPSPFEYADIVTTT 245          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.654e-59
Identity = 122/244 (50.00%), Postives = 156/244 (63.93%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK----------SYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            K + + L   DPE+  II+ E  RQ   ++LI SENFTS SV  A+G+ ++N +SEGYPGARYYGGNE+ID  E LCQ+RAL+AF + P+KWGVNVQ+LSGSP+N QVY A++KPH+R+M L LP GGHLSHGY T+ +KISAVS +FE+ PYR+N  TG IDYD LEK+A L+                  S + R    K          +Y +  MAH+  +      P  FE AD VTTT
Sbjct:   11 KLITSHLVDTDPEVDSIIKDEIERQKHSIDLIASENFTSTSVFDALGTPLSNKYSEGYPGARYYGGNEHIDRMEILCQQRALKAFHVTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLVAG---------TSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLIAAGVIPSPFEYADIVTTT 245          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.527e-59
Identity = 116/217 (53.46%), Postives = 147/217 (67.74%), Query Frame = 2
Query:  263 EHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            + EK RQ + + LIPSENFTS +V+ A+GS M N +SEGYPGARYYGGNE+ID +E LCQ RALE F LDP++WGVNVQ+LSG+P+N  VY+AL+  HDR+M LDLPHGGHLSHGYQT TKKIS +S +FET+PYRL+E TGYIDY++LE+ A  +                  +          +Y +  MAH+  +      P  F +AD VTTT
Sbjct:   67 QKEKQRQKQFINLIPSENFTSQAVLDALGSPMQNKYSEGYPGARYYGGNEFIDASERLCQDRALETFGLDPKEWGVNVQALSGAPANLYVYSALMDTHDRLMGLDLPHGGHLSHGYQTPTKKISFISKYFETLPYRLDEKTGYIDYNKLEELAITYRPKIIVAGASAYSRLIDYARLREICDKVNAYLMADMAHISGLVAAKVMPGPFTHADIVTTT 283          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 5.913e-59
Identity = 121/245 (49.39%), Postives = 154/245 (62.86%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN----------KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            L   DPE+ ++++ EK RQ +GLELI SENF   + ++A+GS + N +SEGYPG RYYGG E +D  E LCQ+RALEAF LDP +WGVNVQ  SGSP+N   YTALL+PHDRIM LDLP GGHL+HGY +D K++SA SIFFE+MPY+LN  TG IDY+QL  +A LF                  S +AR              K++ +  MAH+  +      P  F++AD VTTT   T  G
Sbjct:   49 LSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAG---------TSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRG 284          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 2.247e-58
Identity = 121/225 (53.78%), Postives = 149/225 (66.22%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            DP++A+I++ E  RQ + + LI SEN TS +V  A+GS M+N +SEG PGARYYGGN++ID  E LCQ RALEAF LDP++WGVNVQ LSGSP+N QVY A++  H R+M LDLPHGGHLSHGYQT  +KISAVS +FETMPYR+N  TG IDYD LEK+A LF                      + A +  +Y V  MAH+  +      P  F  AD VTTT
Sbjct:   22 DPQVAEIMKKEVQRQRESIILIASENVTSRAVFDALGSPMSNKYSEGLPGARYYGGNQHIDEIEVLCQNRALEAFHLDPKQWGVNVQCLSGSPANLQVYQAIMPVHGRLMGLDLPHGGHLSHGYQTPQRKISAVSTYFETMPYRVNIDTGLIDYDTLEKNAQLFRPKVLVAGTSAYCRLIDYERMRKIADSVGAYLVVDMAHISGLIASEVIPSPFLYADVVTTT 246          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.610e-56
Identity = 115/227 (50.66%), Postives = 147/227 (64.76%), Query Frame = 2
Query:  236 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFA-TNKSYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            +DPE+ DI+  E+ RQ   + LIPSENFTS SVM  +GS M N +SEGYPG RYYGGN++IDMAESLCQKRALE + LDP+ WGVNVQ LSG+P+N   Y+A+++ +DR+M LDLPHGGHLSHGYQ  +  KIS +S +F+TMPY ++  TG IDYD L K++ LF                    F   A    +Y +  MAH+  +         FE +D VTTT
Sbjct:   44 IDPEMYDILTKERKRQKHSITLIPSENFTSKSVMDLLGSEMQNKYSEGYPGERYYGGNQFIDMAESLCQKRALELYNLDPQLWGVNVQPLSGAPANLYAYSAVMETNDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFQTMPYHVDSQTGIIDYDFLSKTSKLFRPKVIVAGASAYSRVLDYKRFKEIADACGAYLMSDMAHISGLVAAGVTRSPFEYSDIVTTT 270          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.836e-55
Identity = 113/230 (49.13%), Postives = 149/230 (64.78%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            ++ VDPE+  I+  E++RQ   + LIPSENFTS +VM  +GS M N +SEGYPG RYYGGN++ID AESLCQ RAL+ + LDPEKWGVNVQ+LSG+P+N   Y+A+++  DR+M LDLPHGGHLSHGYQ  +  KIS +S +F TMPY +N  TG IDYD L  ++ LF                  + F + A    +Y +  MAH+  +         FE++D VTTT
Sbjct:   27 VQEVDPEMFRILSDERSRQKHSVTLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNQFIDKAESLCQARALDLYGLDPEKWGVNVQALSGAPANLYAYSAVMEVGDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFNTMPYHVNTETGIIDYDTLAMTSKLFRPKVIVAGTSAYSRKLDYARFRKIADGCGAYLLSDMAHISGLVAANVIDSPFEHSDIVTTT 256          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CANGA6.985e-6050.00Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_BOVIN9.122e-6051.04Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ASHGO1.556e-5950.85Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ASHGO2.032e-5950.41Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_YEAST2.654e-5950.00Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYM_NEUCR4.527e-5953.46Putative serine hydroxymethyltransferase, mitochon... [more]
GLYM_RABIT5.913e-5949.39Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR2.247e-5853.78Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_KLULA1.610e-5650.66Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANGA8.836e-5549.13Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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