EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.406e-52
Identity = 109/234 (46.58%), Postives = 147/234 (62.82%), Query Frame = 2
Query:  215 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            ++ P+   DPE+ DI++ E+ RQ   + LIPSENFTS +VM  +GS + N +SEGYPG RYYGGNE ID +ESLCQ RALE + LDP KWGVNVQ LSG+P+N  VY+A++   +R+M LDLP GGHLSHGYQ  +   IS +S +F++MPY ++ +TG IDYD L+  A  F                  + F   +    +Y +  MAH+  +      P  FE++D VTTT
Sbjct:   29 VSKPVSEGDPEMFDILQQERHRQKHSITLIPSENFTSKAVMDLLGSELQNKYSEGYPGERYYGGNEIIDKSESLCQARALELYGLDPAKWGVNVQPLSGAPANLYVYSAIMNVGERLMGLDLPDGGHLSHGYQLKSGTPISFISKYFQSMPYHVDHTTGLIDYDNLQVLAKAFRPKVIVAGTSAYSRLIDYARFKEISQGCGAYLMSDMAHISGLVAANVVPSPFEHSDIVTTT 262          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.151e-50
Identity = 97/169 (57.40%), Postives = 122/169 (72.19%), Query Frame = 2
Query:  224 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLF 730
            PLE+ DPE+  +I  E  RQ K + LI SEN+   S M+A GSV+TN +SEG  G RYYGG  ++D  E LCQKRALE F LDP+ WGVNVQ  SGSP+NF +YTA++ P  RIM LDLP GGHL+HGY+T T+KISA S++F++ PY +  S G IDY+ LEK+ T F
Sbjct:   13 PLEMADPELHALICGEVERQKKTINLIASENYAHQSAMEACGSVLTNKYSEGRVGERYYGGTHWVDRIELLCQKRALELFGLDPDVWGVNVQPYSGSPANFAIYTAVVPPGGRIMGLDLPSGGHLTHGYKTKTRKISASSVYFDSRPYTVG-SNGLIDYEGLEKTFTDF 180          

HSP 2 Score: 25.409 bits (54), Expect = 2.151e-50
Identity = 8/24 (33.33%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  739 LIVAGASAYARLYDYERIRKVCNK 810
            +++ G SAY+R  DY+R++ +  +
Sbjct:  184 ILICGYSAYSRDIDYKRLQSIAGR 207          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.078e-39
Identity = 79/170 (46.47%), Postives = 111/170 (65.29%), Query Frame = 2
Query:  212 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            +++  L   DP+IA+ I +E+ RQ +GLELI SENF S +V+QA GSV TN ++EGYPG RYYGG EY D+ E+L + RA E F  +      NVQ  SGS +N + Y A+L+P D I+ L+L HGGHL+HG+      ++     ++ +PY + + T  IDYD+LEK A
Sbjct:    4 RMSQSLNEEDPQIAEAIANEERRQHEGLELIASENFVSEAVLQAAGSVFTNKYAEGYPGKRYYGGCEYADVVENLARDRAKELFGAE----HANVQPHSGSSANMEAYGAILQPGDTILGLNLAHGGHLTHGH-----PLNFSGKTYKIVPYGVTKETETIDYDELEKLA 164          

HSP 2 Score: 33.8834 bits (76), Expect = 3.078e-39
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 1
Query:  721 HPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            HP   K+IV G SAY R++D++R+R++ +K
Sbjct:  168 HP---KVIVGGGSAYPRIFDFKRMREIADK 194          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.155e-38
Identity = 82/168 (48.81%), Postives = 112/168 (66.67%), Query Frame = 2
Query:  218 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            N  L+ +DPE+ + I +E  RQ + LELI SENFTS +VM+A GSVMTN ++EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  A+LKP D IM LDL HGGHL+HG      K++    FF+   Y +++ TG ID +++E+ A
Sbjct:    3 NDILKRLDPEVFEAIANETKRQTETLELIASENFTSKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDAIMGLDLSHGGHLTHG-----SKVNFSGQFFDAHSYGVDKETGIIDMNKVEEMA 161          

HSP 2 Score: 31.5722 bits (70), Expect = 1.155e-38
Identity = 14/35 (40.00%), Postives = 23/35 (65.71%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            V E    +  KLI+ GASAY++ +D++  R+V +K
Sbjct:  157 VEEMARRVKPKLIITGASAYSQGFDFKAFREVADK 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.327e-38
Identity = 81/165 (49.09%), Postives = 110/165 (66.67%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+ +DPE+ + I +E  RQ + LELI SENFTS +VM+A GSVMTN ++EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  A+LKP D IM LDL HGGHL+HG      K++    FF+   Y +++ TG ID + +E+ A
Sbjct:    6 LKRLDPEVFEAIANETRRQTETLELIASENFTSTAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDSIMGLDLSHGGHLTHG-----SKVNFSGQFFDAHSYGVDKETGIIDMNAVEEMA 161          

HSP 2 Score: 30.4166 bits (67), Expect = 3.327e-38
Identity = 13/35 (37.14%), Postives = 23/35 (65.71%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            V E    +  KLI+ GASAY++ +D++  R++ +K
Sbjct:  157 VEEMALKVKPKLIITGASAYSQGFDFKAFREIADK 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_BACTN (Serine hydroxymethyltransferase OS=Bacteroides thetaiotaomicron GN=glyA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.587e-38
Identity = 79/161 (49.07%), Postives = 100/161 (62.11%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D  I DIIE E  RQ KG+ELI SENF S  VMQA+GS +TN ++EGYPG RYYGG E +D +E +   R  E F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y LN+ TG +DYDQ+E+ A
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKEIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLNQETGRVDYDQMEEVA 155          

HSP 2 Score: 33.4982 bits (75), Expect = 9.587e-38
Identity = 12/25 (48.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            K+I+ G SAY+R +DY+R+R++ +K
Sbjct:  161 KMIIGGGSAYSREWDYKRMREIADK 185          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_BACV8 (Serine hydroxymethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.761e-37
Identity = 78/161 (48.45%), Postives = 100/161 (62.11%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D  I DIIE E  RQ KG+ELI SENF S  VMQA+GS +TN ++EGYPG RYYGG E +D +E +   R  + F  +   W  NVQ  SG+ +N  V+ A+L P D+ M L+L HGGHLSHG   +T       I +    Y LN+ TG +DYDQ+E+ A
Sbjct:    4 DDLIFDIIEKEHQRQLKGIELIASENFVSDQVMQAMGSCLTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRLKQIFGAE---W-ANVQPHSGAQANAAVFLAVLNPGDKFMGLNLAHGGHLSHGSLVNTS-----GIIYTPCEYNLNKETGRVDYDQMEEIA 155          

HSP 2 Score: 33.4982 bits (75), Expect = 2.761e-37
Identity = 12/25 (48.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            K+I+ G SAY+R +DY+R+R++ +K
Sbjct:  161 KMIIGGGSAYSREWDYKRMREIADK 185          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.599e-37
Identity = 75/165 (45.45%), Postives = 110/165 (66.67%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            ++V DPE+AD I  E ARQ   +ELI SENF S +VM A+GS +TN ++EGYPG RYYGG E++D+AE+L  +RA + F         NVQ  SG+ +N  V+ ALL+P D +M ++L HGGHL+HG       ++    +F  +PY ++++ G+IDY+++EK A
Sbjct:    7 IKVFDPELADSITMEIARQNDHIELIASENFVSKAVMAAMGSPLTNKYAEGYPGKRYYGGCEFVDIAENLAIERAKKLFGCT----YANVQPHSGAQANMAVFFALLQPGDTVMGMNLAHGGHLTHG-----SPVNFSGSYFNIVPYGVDDN-GFIDYEEVEKIA 161          

HSP 2 Score: 36.5798 bits (83), Expect = 3.599e-37
Identity = 17/34 (50.00%), Postives = 25/34 (73.53%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCN 807
            + ++C P   KLIVAGASAYAR  D++R R++ +
Sbjct:  160 IAKECKP---KLIVAGASAYARKIDFKRFREIAD 190          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_AQUAE (Serine hydroxymethyltransferase OS=Aquifex aeolicus GN=glyA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.685e-37
Identity = 77/161 (47.83%), Postives = 102/161 (63.35%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            DPE+ D +  E  RQ+  LE+I SENFTS++VM+A GSV+TN ++EG PG RYYGG EY+D+ E+L  +RA + F  +      NVQ  SGS +N  VY A+L P D IM +DL HGGHL+HG      K++     +  + Y +N  T  IDYDQL K A
Sbjct:    8 DPEVFDAVVKEYERQFYNLEMIASENFTSLAVMEATGSVLTNKYAEGLPGKRYYGGCEYVDVVENLAIERAKKLFGAE----HANVQPHSGSQANMAVYFAVLNPGDTIMGMDLAHGGHLTHG-----AKVNFSGKLYNVIHYGVNPETELIDYDQLYKLA 159          

HSP 2 Score: 31.9574 bits (71), Expect = 4.685e-37
Identity = 12/25 (48.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLIV GASAY R++D+ ++R++ ++
Sbjct:  165 KLIVGGASAYPRVFDWAKMREIADE 189          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.308e-37
Identity = 93/232 (40.09%), Postives = 124/232 (53.45%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DPEIA++I  E  RQ   +ELI SENF S +VM+A+G+ +TN ++EGYPG RYYGG EY+DMAE L ++R  + F  +      NVQ  SG+ +N   Y ALLKP D ++ +DL HGGHL+HG      K++     +  + Y + E TGYIDYDQ+E  A                       F   A    +Y +  MAH+  +     HP     AD VTTT   T  G
Sbjct:   10 DPEIAEVILKELNRQRNKIELIASENFVSRAVMEAMGTPLTNKYAEGYPGRRYYGGCEYVDMAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALLKPGDTVLGMDLAHGGHLTHG-----SKVNFSGQIYNFVSYGVREDTGYIDYDQVEDLAKKHKPKLIVAGASAYPRIIDFKKFREIADKVGAYLMVDMAHIAGLVAAGLHPNPVPYADVVTTTTHKTLRG 232          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_YEAST2.406e-5246.58Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ENCCU2.151e-5057.40Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_ACIBL3.078e-3946.47Serine hydroxymethyltransferase OS=Acidobacteria b... [more]
GLYA_CHLTE1.155e-3848.81Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_CHLP83.327e-3849.09Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_BACTN9.587e-3849.07Serine hydroxymethyltransferase OS=Bacteroides the... [more]
GLYA_BACV82.761e-3748.45Serine hydroxymethyltransferase OS=Bacteroides vul... [more]
GLYA_CLOPH3.599e-3745.45Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA_AQUAE4.685e-3747.83Serine hydroxymethyltransferase OS=Aquifex aeolicu... [more]
GLYA_THETN8.308e-3740.09Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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