EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA3_BURS3 (Serine hydroxymethyltransferase 3 OS=Burkholderia sp. (strain 383) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.381e-30
Identity = 88/226 (38.94%), Postives = 117/226 (51.77%), Query Frame = 2
Query:  236 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            VDPEI   IE E  RQ   +ELI SEN+TS +VM A GS +TN ++EGYPG RYYGG EY+D+ E L   R  + F  +      NVQ  SGS +N  V+ A+LKP D IM + L HGGHL+HG       ++    +F  + Y LNE+   IDY+  E+ A                        A+ A +  +Y +  MAH   +     +P    +AD VTTT
Sbjct:   12 VDPEIFAAIEQENRRQEDHIELIASENYTSPAVMAAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRVKQLFGAE----AANVQPNSGSQANQGVFFAMLKPGDTIMGMSLAHGGHLTHG-----SPVNMSGKWFNVVSYGLNENED-IDYEAAEQLAQEHKPKLIVAGASAFSLKIDFERLAKIAKSVGAYLMVDMAHYAGLIAAGVYPNPVPHADFVTTT 227          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CORGL (Serine hydroxymethyltransferase OS=Corynebacterium glutamicum GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.592e-30
Identity = 73/166 (43.98%), Postives = 98/166 (59.04%), Query Frame = 2
Query:  224 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            PL  +DPE+A  I  E ARQ   LE+I SENF   SV+QA GSV+TN ++EGYPG RYYGG E +D+ E L + RA   F  +      NVQ  SG+ +N  V   L +P D+IM L L HGGHL+HG      K++     +E + Y ++  T  +D DQ+ + A
Sbjct:   14 PLNELDPEVAAAIAGELARQRDTLEMIASENFVPRSVLQAQGSVLTNKYAEGYPGRRYYGGCEQVDIIEDLARDRAKALFGAE----FANVQPHSGAQANAAVLMTLAEPGDKIMGLSLAHGGHLTHG-----MKLNFSGKLYEVVAYGVDPETMRVDMDQVREIA 170          

HSP 2 Score: 24.6386 bits (52), Expect = 3.592e-30
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKV 801
            K+I+AG SAY R  D+E  + +
Sbjct:  176 KVIIAGWSAYPRHLDFEAFQSI 197          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CORGB (Serine hydroxymethyltransferase OS=Corynebacterium glutamicum (strain R) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.592e-30
Identity = 73/166 (43.98%), Postives = 98/166 (59.04%), Query Frame = 2
Query:  224 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            PL  +DPE+A  I  E ARQ   LE+I SENF   SV+QA GSV+TN ++EGYPG RYYGG E +D+ E L + RA   F  +      NVQ  SG+ +N  V   L +P D+IM L L HGGHL+HG      K++     +E + Y ++  T  +D DQ+ + A
Sbjct:   14 PLNELDPEVAAAIAGELARQRDTLEMIASENFVPRSVLQAQGSVLTNKYAEGYPGRRYYGGCEQVDIIEDLARDRAKALFGAE----FANVQPHSGAQANAAVLMTLAEPGDKIMGLSLAHGGHLTHG-----MKLNFSGKLYEVVAYGVDPETMRVDMDQVREIA 170          

HSP 2 Score: 24.6386 bits (52), Expect = 3.592e-30
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKV 801
            K+I+AG SAY R  D+E  + +
Sbjct:  176 KVIIAGWSAYPRHLDFEAFQSI 197          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DECAR (Serine hydroxymethyltransferase OS=Dechloromonas aromatica (strain RCB) GN=glyA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.595e-30
Identity = 72/165 (43.64%), Postives = 95/165 (57.58%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L  VDPE+   I+ E  RQ   +ELI SEN+ S +VM+A GS +TN ++EGYPG RYYGG EY+D+AE +   R  + F  +      NVQ  SGS +N  V  A  KP D IM + L  GGHL+HG       ++    +F  + Y LNE    IDYD++E  A
Sbjct:    8 LAKVDPELWQAIQAEVQRQEDHIELIASENYVSKAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDVAEQIAIDRLKKLFGAE----AANVQPNSGSQANQAVLMAFAKPGDTIMGMSLAEGGHLTHG-----MALNMSGKWFNVVSYGLNEKE-EIDYDKMEALA 162          

HSP 2 Score: 31.187 bits (69), Expect = 3.595e-30
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            K+IVAGASAYA   D+ER  K+  +
Sbjct:  168 KIIVAGASAYALRIDWERFAKIAKE 192          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_BORA1 (Serine hydroxymethyltransferase OS=Bordetella avium (strain 197N) GN=glyA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.595e-30
Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+ VDP++   I+ E  RQ + +ELI SEN+ S +VMQA G+ +TN ++EGYPG RYYGG EY+D+ E L   R  E F  +      NVQ  SGS +N  VY A+LKP D ++ + L  GGHL+HG       ++A    +  + Y L+E+   ++Y Q+E  A
Sbjct:    8 LDKVDPDLWAAIQKEDERQEQHIELIASENYASPAVMQAQGTQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRLKELFGAE----AANVQPNSGSQANQGVYMAVLKPGDTVLGMSLAEGGHLTHG-----ASVNASGKLYNFLSYGLDENE-VLNYAQVEALA 162          

HSP 2 Score: 31.187 bits (69), Expect = 3.595e-30
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLIVAGASAYA   D+ER+ ++  +
Sbjct:  168 KLIVAGASAYALHIDFERMARIARE 192          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CAMC5 (Serine hydroxymethyltransferase OS=Campylobacter curvus (strain 525.92) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.595e-30
Identity = 71/161 (44.10%), Postives = 98/161 (60.87%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQL 709
            L+  D EI D++  E  RQ   LE+I SENFT   VM+ +GS++TN ++EGYPG RYYGG EY+D  E L   R  + F  +      NVQ  SGS +N  VY ALL P D+I+ +DL HGGHL+HG      K+S+    +E+  Y + E  G I+Y+++
Sbjct:    3 LQSYDKEIFDLVNLELKRQCDHLEMIASENFTYPEVMEVMGSILTNKYAEGYPGKRYYGGCEYVDGIEQLAIDRCKQLFGCE----FANVQPNSGSQANQGVYGALLNPGDKILGMDLSHGGHLTHG-----AKVSSSGKIYESFFYGV-ELDGRINYERI 153          

HSP 2 Score: 27.335 bits (59), Expect = 3.595e-30
Identity = 10/25 (40.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            K+IV GASAY R  ++++ R + ++
Sbjct:  163 KMIVCGASAYTREIEFDKFRAIADE 187          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CAMFF (Serine hydroxymethyltransferase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=glyA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.595e-30
Identity = 70/167 (41.92%), Postives = 100/167 (59.88%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATL 727
            LE  D +I  ++  E  RQ   LE+I SENFT   VM+ +GSV+TN ++EGYP  RYYGG E++D  E +   R  + F  +      NVQ  SGS +N  VY A LKP D+I+ +DL HGGHL+HG      K+S+    +E+  Y + E  G I+Y+++E+ A +
Sbjct:    3 LESFDKDIYSLVNKELERQCDHLEMIASENFTYPDVMEVMGSVLTNKYAEGYPSKRYYGGCEFVDEIEQIAIDRCKKLFGCE----FANVQPNSGSQANQGVYGAFLKPGDKILGMDLSHGGHLTHG-----SKVSSSGKNYESFFYGV-ELDGRINYNKVEEIANI 159          

HSP 2 Score: 30.4166 bits (67), Expect = 3.595e-30
Identity = 12/24 (50.00%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            K+IV GASAYAR  D+++ R++ +
Sbjct:  163 KMIVCGASAYAREIDFKKFREIAD 186          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAC (Serine hydroxymethyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.595e-30
Identity = 74/170 (43.53%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  212 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            Q N  +E  DPE+   I+ E  RQ + +ELI SEN+ S +VM A GS +TN ++EGYPG RYYGG E +D+ E L   R  + F  D      NVQ  SGS +N  V  A LKP D I+ + L  GGHL+HG       ++    +F  + Y LNE    IDYD LE  A
Sbjct:    3 QRNILVEQADPEVWAAIQAENLRQEQHIELIASENYASPAVMAAQGSQLTNKYAEGYPGKRYYGGCENVDVVEQLAIDRVKKLFGAD----AANVQPNSGSQANQAVLLAFLKPGDTILGMSLAEGGHLTHG-----MPLNMSGKWFNIVSYGLNEKE-EIDYDALEAKA 162          

HSP 2 Score: 30.8018 bits (68), Expect = 3.595e-30
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLI+AGASAY+   D+ER  K+  +
Sbjct:  168 KLIIAGASAYSLRIDFERFAKIAKE 192          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_VESOH (Serine hydroxymethyltransferase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 92/236 (38.98%), Postives = 119/236 (50.42%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            L  VD EI   I  E+ RQ   +ELI SEN+TS +VM+  GS +TN ++EGYP  RYYGG EY+DM E L   RA   F  D      NVQ  SGS +N  V+ ALL P D I+ + L HGGHL+HG    T   S  +  F ++ Y LN+ TG IDY+Q+E  A  +                    F   A +  +Y +  MAH+  +     +P     AD  TTT   T  G
Sbjct:    8 LAKVDAEIYKAIVLEETRQETHIELIASENYTSPAVMETQGSKLTNKYAEGYPCKRYYGGCEYVDMVEQLAIDRAKTLFGAD----YANVQPHSGSQANAAVFQALLVPGDTILGMSLAHGGHLTHG---ATPSFSGKN--FNSIQYGLNQKTGEIDYEQVEVLAKRYKPKMIIAGFSAYSRMVDWQRFREIADSVGAYLMVDMAHVAGLIATGEYPSPVAIADVTTTTTHKTLRG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_STAAW (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain MW2) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 85/232 (36.64%), Postives = 118/232 (50.86%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYN-VGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TN ++EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L+  D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD++ K A                       F   A   +   +  MAH+  +     HP   E AD VTTT   T  G
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRG 230          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA3_BURS33.381e-3038.94Serine hydroxymethyltransferase 3 OS=Burkholderia ... [more]
GLYA_CORGL3.592e-3043.98Serine hydroxymethyltransferase OS=Corynebacterium... [more]
GLYA_CORGB3.592e-3043.98Serine hydroxymethyltransferase OS=Corynebacterium... [more]
GLYA_DECAR3.595e-3043.64Serine hydroxymethyltransferase OS=Dechloromonas a... [more]
GLYA_BORA13.595e-3041.82Serine hydroxymethyltransferase OS=Bordetella aviu... [more]
GLYA_CAMC53.595e-3044.10Serine hydroxymethyltransferase OS=Campylobacter c... [more]
GLYA_CAMFF3.595e-3041.92Serine hydroxymethyltransferase OS=Campylobacter f... [more]
GLYA_ACIAC3.595e-3043.53Serine hydroxymethyltransferase OS=Acidovorax aven... [more]
GLYA_VESOH4.416e-3038.98Serine hydroxymethyltransferase OS=Vesicomyosocius... [more]
GLYA_STAAW4.416e-3036.64Serine hydroxymethyltransferase OS=Staphylococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
back to top