EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_PROM2 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9215) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 84/232 (36.21%), Postives = 119/232 (51.29%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DP I++ I  EK RQ   LELI SENF S++VMQA GSV+TN ++EG P  RYYGG E++D  E L   RA + F  +   W  NVQ  SG+ +N  V+ +LLKP D IM +DL HGGHL+HG       ++    +F  + Y +N+ T  +++D++ + A                       F   A    ++ +  +AH+  +     HP      D VTTT   T  G
Sbjct:   11 DPVISNFINSEKNRQETHLELIASENFASIAVMQAQGSVLTNKYAEGLPQKRYYGGCEFVDEIEELAINRAKKLFNAN---W-ANVQPHSGAQANAAVFLSLLKPGDTIMGMDLSHGGHLTHG-----SPVNMSGKWFNAVHYGVNKETSELNFDEIREIALETKPKLIICGYSAYPRTIDFESFRNIADEVGAFLMADIAHIAGLVASKLHPNPIPYCDVVTTTTHKTLRG 233          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_MYCMO (Serine hydroxymethyltransferase OS=Mycoplasma mobile GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 83/236 (35.17%), Postives = 124/236 (52.54%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            + + D EI  II +E+ RQ + +ELI SEN+ S  V++A GS++TN +SEGYPGARYY G E++D  E+L  +R  + F +       NVQ  SGS +N     AL+KP  +I+ + L  GGHL+HGY     KIS    F++   Y +N+  G +DYD +EK A                       F++ A    ++ +  +AH+  +     HP    +AD +T+T   T  G
Sbjct:    4 INLKDKEIEKIINNEQQRQEEHIELIASENYVSKDVLEATGSILTNKYSEGYPGARYYDGCEFVDQIETLAIERLKKLFNVK----FANVQPHSGSSANSAAIAALVKPGGKILGMSLDAGGHLTHGY-----KISFSGTFYDPYFYGVNDE-GLLDYDVIEKLAEKIKPELIICGASNYSRTIDFEKFSKIAKKVGAFLLADIAHIAGLIIADLHPSPVGHADVITSTTHKTIRG 229          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_LACLA (Serine hydroxymethyltransferase OS=Lactococcus lactis subsp. lactis GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 85/235 (36.17%), Postives = 117/235 (49.79%), Query Frame = 2
Query:  230 EVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYN-VGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            E  DPE+   I  E+ RQ + +ELI SEN  S +VM A GSV+TN ++EGYPG RYYGG E +D+ E+L  +RA E F         NVQ  SGS +N   Y AL++P D ++ +DL  GGHL+HG       ++     +  +PY +N  T  +DYD++ K A                     + F   A +     +  MAH+  +     HP     AD VTTT   T  G
Sbjct:    9 ESFDPELWAAIHAEEIRQQQNIELIASENIVSKAVMAAQGSVLTNKYAEGYPGKRYYGGTEAVDVVENLAIERAKELFGAK----FANVQPHSGSQANAAAYMALIQPGDTVLGMDLNAGGHLTHG-----ASVNFSGKTYHFVPYGVNSETELLDYDEILKIAKQVQPKLIVAGASAYSRLIDFAKFREIADSVGAKLMVDMAHIAGLVATGAHPNPLPYADVVTTTTHKTLRG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DESDG (Serine hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain G20) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 91/239 (38.08%), Postives = 120/239 (50.21%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK----SYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            L + DPE+   I  E  RQ   LELI SENF S +V  A GSV+T+ ++EGYPG RYYGG E++D+AE+L   RA E F         NVQ  SGS +N  VY + L P D I+A+DL HGGHL+HG       ++    F+  + Y ++  TG IDYD +   A L   +            + +  FARF        S  +  MAH+  +     HP     A   TTT   T  G
Sbjct:    4 LLIQDPEVGRAIVQEVERQTGKLELIASENFVSPAVRAAQGSVLTHKYAEGYPGKRYYGGCEFVDVAENLAIDRACEIFGAQ----YANVQPHSGSQANMAVYFSALTPGDTILAMDLSHGGHLTHG-----SPVNFSGRFYNVVFYGVSRETGCIDYDSV---AELAREHRPAMIVAGASAYSRIIDFARFRAIADEVGSLLMVDMAHIAGLVAAGLHPSPVGTAHFTTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 84/240 (35.00%), Postives = 125/240 (52.08%), Query Frame = 2
Query:  215 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            LN  L+ VDPEI + +E E +RQ + +ELI SENF S +VM+A+GS +TN ++EG PG RYYGG EY+D+ E+L ++RA + F  +     VNVQ  SG+ +N   Y A L+P D ++ ++L HGGHL+HG       ++     +  + Y +   T  I+Y+++ + A                           A    +Y +  MAH+  +     HP     AD VTTT   T  G
Sbjct:    4 LNLRLKDVDPEIFEAMEKELSRQREKIELIASENFVSRAVMEAMGSHLTNKYAEGLPGKRYYGGCEYVDVVENLARERAKKLFGAE----HVNVQPHSGAQANMAAYMAFLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNFVSYGVEPDTEKINYEKVFELAYKHKPKMIVAGASAYPRVIDFKHLKEIADEVGAYLMVDMAHIAGLVAAGLHPSPIPYADVVTTTTHKTLRG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_AZOVD (Serine hydroxymethyltransferase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 84/232 (36.21%), Postives = 119/232 (51.29%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D E+   ++ E  RQ   +ELI SEN+TS +VM+A GSV+TN ++EGYPG RYYGG EY+D+ E L   RA + F  D      NVQ  +GS +N  VY AL+KP D ++ + L HGGHL+HG       ++     +  + Y + ++ G+IDYD++E+ A                     + F   A    +Y    MAH   +     +P     AD VTTT   T  G
Sbjct:   12 DAELFAAMKQEAQRQEDHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKQLFGAD----YANVQPHAGSQANAAVYQALVKPGDTVLGMSLAHGGHLTHG-----ASVNFSGKMYNAVQYGI-DANGFIDYDEVERLALEHKPKMIVAGYSAYSQVLDFARFREIADKVGAYLFVDMAHFAGLVAAGVYPNPVPFADVVTTTTHKTLRG 233          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEF5 (Serine hydroxymethyltransferase 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.416e-30
Identity = 88/236 (37.29%), Postives = 119/236 (50.42%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYNVGR-----MAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D  +   I  E+ RQ   +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG E++D  E+L  +RA + F  D      NVQ  SGS +N +VY ALL+  D I+ + L HGGHL+HG      K+S+    +  + Y ++  TG IDYD++E+ A                       F + A      VG      MAH+  +     +P     AD VTTT   T  G
Sbjct:   12 DDALLAAINAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGAD----YANVQPHSGSSANSEVYLALLQAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGIDTRTGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRQIAD----KVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_HAEIN (Serine hydroxymethyltransferase OS=Haemophilus influenzae GN=glyA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.680e-30
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  218 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            N  +   DP +   I+ E  RQ + +ELI SEN+ S  VM+A GS  TN ++EGYPG RYYGG EY D+ E L   RA E F  D     VNVQ  SGS +N  VY AL+   D I+ +DL HGGHL+HG      K+S     + ++ Y +  + G IDY+ + + A
Sbjct:    5 NMTIADYDPVLWQAIQDENRRQEEHIELIASENYASPRVMEAQGSQFTNKYAEGYPGKRYYGGCEYADIVEQLAIDRAKELFGAD----YVNVQPHSGSQANAAVYGALINAGDTILGMDLAHGGHLTHG-----AKVSFSGKIYNSVLYGIT-ADGLIDYEDVRQKA 162          

HSP 2 Score: 29.6462 bits (65), Expect = 4.680e-30
Identity = 13/32 (40.62%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  715 KCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            +C P   KLIVAG SAY+++ D+ ++R++ ++
Sbjct:  164 ECKP---KLIVAGFSAYSQVVDWAKMREIADE 192          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_HAEIG (Serine hydroxymethyltransferase OS=Haemophilus influenzae (strain PittGG) GN=glyA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.680e-30
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  218 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            N  +   DP +   I+ E  RQ + +ELI SEN+ S  VM+A GS  TN ++EGYPG RYYGG EY D+ E L   RA E F  D     VNVQ  SGS +N  VY AL+   D I+ +DL HGGHL+HG      K+S     + ++ Y +  + G IDY+ + + A
Sbjct:    5 NMTIADYDPVLWQAIQDENRRQEEHIELIASENYASPRVMEAQGSQFTNKYAEGYPGKRYYGGCEYADIVEQLAIDRAKELFGAD----YVNVQPHSGSQANAAVYGALINAGDTILGMDLAHGGHLTHG-----AKVSFSGKIYNSVLYGIT-ADGLIDYEDVRQKA 162          

HSP 2 Score: 29.6462 bits (65), Expect = 4.680e-30
Identity = 13/32 (40.62%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  715 KCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            +C P   KLIVAG SAY+++ D+ ++R++ ++
Sbjct:  164 ECKP---KLIVAGFSAYSQVVDWAKMREIADE 192          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_HAEIE (Serine hydroxymethyltransferase OS=Haemophilus influenzae (strain PittEE) GN=glyA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.680e-30
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  218 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            N  +   DP +   I+ E  RQ + +ELI SEN+ S  VM+A GS  TN ++EGYPG RYYGG EY D+ E L   RA E F  D     VNVQ  SGS +N  VY AL+   D I+ +DL HGGHL+HG      K+S     + ++ Y +  + G IDY+ + + A
Sbjct:    5 NMTIADYDPVLWQAIQDENRRQEEHIELIASENYASPRVMEAQGSQFTNKYAEGYPGKRYYGGCEYADIVEQLAIDRAKELFGAD----YVNVQPHSGSQANAAVYGALINAGDTILGMDLAHGGHLTHG-----AKVSFSGKIYNSVLYGIT-ADGLIDYEDVRQKA 162          

HSP 2 Score: 29.6462 bits (65), Expect = 4.680e-30
Identity = 13/32 (40.62%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  715 KCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            +C P   KLIVAG SAY+++ D+ ++R++ ++
Sbjct:  164 ECKP---KLIVAGFSAYSQVVDWAKMREIADE 192          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROM24.416e-3036.21Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_MYCMO4.416e-3035.17Serine hydroxymethyltransferase OS=Mycoplasma mobi... [more]
GLYA_LACLA4.416e-3036.17Serine hydroxymethyltransferase OS=Lactococcus lac... [more]
GLYA_DESDG4.416e-3038.08Serine hydroxymethyltransferase OS=Desulfovibrio d... [more]
GLYA_CARHZ4.416e-3035.00Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA_AZOVD4.416e-3036.21Serine hydroxymethyltransferase OS=Azotobacter vin... [more]
GLYA2_PSEF54.416e-3037.29Serine hydroxymethyltransferase 2 OS=Pseudomonas f... [more]
GLYA_HAEIN4.680e-3042.86Serine hydroxymethyltransferase OS=Haemophilus inf... [more]
GLYA_HAEIG4.680e-3042.86Serine hydroxymethyltransferase OS=Haemophilus inf... [more]
GLYA_HAEIE4.680e-3042.86Serine hydroxymethyltransferase OS=Haemophilus inf... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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