EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA1_MYCTU (Serine hydroxymethyltransferase 1 OS=Mycobacterium tuberculosis GN=glyA1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.767e-30
Identity = 84/240 (35.00%), Postives = 125/240 (52.08%), Query Frame = 2
Query:  215 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYN-VGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            ++APL  VDP+IA+++  E  RQ   LE+I SENF   +V+QA GSV+TN ++EG PG RYYGG E++D+ E+L + RA   F  +      NVQ  SG+ +N  V  AL+ P +R++ LDL +GGHL+HG      +++     +E   Y ++ +T  ID D +  +A  F                  + F   A       +  MAH   +     HP    +AD V+TT+  T  G
Sbjct:    1 MSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHG-----MRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGG 231          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA1_MYCBO (Serine hydroxymethyltransferase 1 OS=Mycobacterium bovis GN=glyA1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.767e-30
Identity = 84/240 (35.00%), Postives = 125/240 (52.08%), Query Frame = 2
Query:  215 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYN-VGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            ++APL  VDP+IA+++  E  RQ   LE+I SENF   +V+QA GSV+TN ++EG PG RYYGG E++D+ E+L + RA   F  +      NVQ  SG+ +N  V  AL+ P +R++ LDL +GGHL+HG      +++     +E   Y ++ +T  ID D +  +A  F                  + F   A       +  MAH   +     HP    +AD V+TT+  T  G
Sbjct:    1 MSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFAPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHG-----MRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGG 231          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_GRABC (Serine hydroxymethyltransferase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=glyA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 6.091e-30
Identity = 68/167 (40.72%), Postives = 96/167 (57.49%), Query Frame = 2
Query:  221 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            A L   DP++   +E E  RQ  G+ELI SEN  S +V++A GSV+TN ++EGYPG RYYGG   +D+AE L   RA + F  +      NVQ  SG+ +N  V+ AL KP D I+ + L  GGHL+HG        +    +F  + Y + +  G +DY++LE  A
Sbjct:   12 ARLADTDPDLFAALEKEFHRQEDGIELIASENIVSAAVLEAQGSVLTNKYAEGYPGKRYYGGCAAVDIAEQLAIDRAKQLFGCE----FANVQPHSGAQANGAVFFALAKPGDTILGMSLAAGGHLTHGAAP-----TVSGKWFNAVQYGVRKEDGLLDYEELEALA 169          

HSP 2 Score: 33.4982 bits (75), Expect = 6.091e-30
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            K+I+AG SAY R  D+ RIRKV ++
Sbjct:  175 KIIIAGGSAYPRFIDFPRIRKVADE 199          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CAMC1 (Serine hydroxymethyltransferase OS=Campylobacter concisus (strain 13826) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.095e-30
Identity = 70/161 (43.48%), Postives = 98/161 (60.87%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQL 709
            L+  D +I D++  E  RQ   LE+I SENFT   VM+ +GS++TN ++EGYPG RYYGG E++D  E +   R  E F  +      NVQ  SGS +N  VY ALL P D+I+ +DL HGGHL+HG      K+S+    +E+  Y + E  G I+YD++
Sbjct:    3 LQSYDKDIYDLVNLELKRQCDHLEMIASENFTYPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIEQIAIDRCKELFGCE----FANVQPNSGSQANQGVYGALLNPGDKILGMDLSHGGHLTHG-----AKVSSSGKMYESFFYGV-ELDGRINYDRV 153          

HSP 2 Score: 27.335 bits (59), Expect = 6.095e-30
Identity = 10/24 (41.67%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            K+IV GASAY R  ++++ R++ +
Sbjct:  163 KMIVCGASAYTREIEFKKFREIAD 186          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_PROM9 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9312) GN=glyA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 84/236 (35.59%), Postives = 122/236 (51.69%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            L+  DP I++ I  EK RQ   LELI SENF S++VMQA GSV+TN ++EG P  RYYGG E++D  E L  +RA + F  +   W  NVQ  SG+ +N  V+ +LL+P D IM +DL HGGHL+HG       ++    +F  + Y +N+ T  +++D++ + A                       F   A    ++ +  +AH+  +     HP      D VTTT   T  G
Sbjct:    7 LKKSDPVISNFINSEKNRQETHLELIASENFASIAVMQAQGSVLTNKYAEGLPQKRYYGGCEFVDEIEELAIQRAKKLFNAN---W-ANVQPHSGAQANAAVFLSLLQPGDTIMGMDLSHGGHLTHG-----SPVNMSGKWFNAVHYGVNKETSELNFDEIREIALETKPKLIICGYSAYPRTIDFESFRNIADEVGAFLMADIAHIAGLVASKLHPNPLPYCDVVTTTTHKTLRG 233          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_OCEIH (Serine hydroxymethyltransferase OS=Oceanobacillus iheyensis GN=glyA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 80/232 (34.48%), Postives = 123/232 (53.02%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFA-TNKSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D E+ + ++ EK RQ   +ELI SENF + +VM A+GS++TN ++EGYPG RYYGG E++D+ E+L + RA E F  D      NVQ  SG+ +N  VY+A+L+P D ++ ++L HGGHL+HG       ++     +  + Y +++ T  +DYD + + A                     + F   A    +Y +  MAH+  +     H     +AD VTTT   T  G
Sbjct:    8 DTEVFEAMQAEKNRQQDKIELIASENFVTKAVMDAMGSILTNKYAEGYPGKRYYGGCEHVDVVENLARDRAKELFGAD----HANVQPHSGAQANMAVYSAVLEPGDTVLGMNLNHGGHLTHG-----SPVNFSGQLYNFVDYGVDKETEQLDYDAVLEKAKEVKPKLIVAGASAYSRSINFAKFREIADAVDAYLMVDMAHIAGLVATGEHENPVPHADFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_NITEU (Serine hydroxymethyltransferase OS=Nitrosomonas europaea GN=glyA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 86/236 (36.44%), Postives = 118/236 (50.00%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            +E VDP++   I+ E  RQ   +ELI SEN+ S +V+QA G+V+TN ++EGYPG RYYGG  Y+D+ E L   R    F  +     VNVQ  SGS +N  VY + LKP D ++ + L HGGHL+HG       ++     F ++ Y LN  T  IDY +LE+ A                       F + A N  +Y    MAH   +     +P     AD VT+T   T  G
Sbjct:    8 IEQVDPDLWQAIKGEVQRQEDHIELIASENYASPAVLQAQGTVLTNKYAEGYPGKRYYGGCRYVDIVEQLAIDRLRNLFNAE----YVNVQPHSGSQANAAVYLSALKPGDTLLGMSLAHGGHLTHG-----SAVNMSGKIFNSISYGLNPETEEIDYAELERLAHEHKPRMIVAGASSYARVIDWKAFRQIADNVGAYLFVDMAHYAGLIAAGYYPNPVGIADFVTSTTHKTLRG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_LEUMM (Serine hydroxymethyltransferase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=glyA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 86/233 (36.91%), Postives = 115/233 (49.36%), Query Frame = 2
Query:  236 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            +DP +   I+ E ARQ + +ELI SENFTS +V  A GSV+TN ++EGYP  RYYGG EY+D+ E +   R  E F  +      NVQ  SGS +N   Y A LKP D+I+ + L  GGHL+HG      K+S     +E+  Y LN  T  +DY+ + K A                       F   A    +Y +  MAH+  +     HP     AD VT+T   T  G
Sbjct:    6 LDPIVWSAIQQESARQNRTIELIASENFTSQAVRAAQGSVLTNKYAEGYPYKRYYGGTEYVDVVEQVAIDRLKELFGAE----YANVQPHSGSQANAAAYMAFLKPGDKILGMSLDAGGHLTHG-----AKVSFSGKVYESHTYGLNSETETLDYEAIAKQAREVKPQMIVAGASAYSRIIEFDKFRAIADEVGAYLMVDMAHIAGLVAAGLHPNPVGIADVVTSTTHKTLRG 229          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_GLOVI (Serine hydroxymethyltransferase OS=Gloeobacter violaceus GN=gylA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 84/236 (35.59%), Postives = 118/236 (50.00%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            L   DP +A  I+ E  RQ   LELI SENFTS +VM A GSV+TN ++EG P  RYYGG E++D  E +   RA   F         NVQ  SG+ +N  V+ ALL+  D+I+ +DL HGGHL+HG       ++   I+FE + Y ++ ++  ID+DQ+ + A                       F   A    +Y +  +AH+  +     HP    + D VTTT   T  G
Sbjct:    8 LRATDPLVAGWIDRELNRQRSHLELIASENFTSAAVMAAQGSVLTNKYAEGLPSKRYYGGCEFVDAVEQIAIDRAKALFGAA----HANVQPHSGAQANAAVFLALLERGDKILGMDLSHGGHLTHG-----SPVNQSGIYFEALHYGVDPASHRIDFDQVRELAHAHRPKLIICGYSAYPRVIDFECFREIADEVGAYLLADIAHIAGLVVAGVHPNPIPHCDVVTTTTHKTLRG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_BUCAI (Serine hydroxymethyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=glyA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 86/232 (37.07%), Postives = 118/232 (50.86%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DP++   IE EK RQ   +ELI SEN+TS  VM   GS +TN ++EGYPG RYYGG EY+D+ E L  +RA + F  D      NVQ  SGS +NF VYTALL P D I+ + L HGGHL+HG       ++     +  + Y ++E+ G I+Y++L +    +                        A N  +Y V  MAH+  +     +P     A  VT+T   T  G
Sbjct:   12 DPKLWFAIEQEKKRQENHIELIASENYTSNYVMDVQGSQLTNKYAEGYPGKRYYGGCEYVDIIEELAIERAKKLFNAD----YANVQPHSGSQANFSVYTALLNPGDTILGMKLSHGGHLTHG-----SSVNFSGKMYNVISYGVDEN-GEINYEELLRLTKKYKPKMIIGGFSAYSGICNWKKMRFIADNADAYFVVDMAHVAGLVAAGIYPNPINYAHVVTSTTHKTLAG 233          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_MYCTU5.767e-3035.00Serine hydroxymethyltransferase 1 OS=Mycobacterium... [more]
GLYA1_MYCBO5.767e-3035.00Serine hydroxymethyltransferase 1 OS=Mycobacterium... [more]
GLYA_GRABC6.091e-3040.72Serine hydroxymethyltransferase OS=Granulibacter b... [more]
GLYA_CAMC16.095e-3043.48Serine hydroxymethyltransferase OS=Campylobacter c... [more]
GLYA_PROM97.532e-3035.59Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_OCEIH7.532e-3034.48Serine hydroxymethyltransferase OS=Oceanobacillus ... [more]
GLYA_NITEU7.532e-3036.44Serine hydroxymethyltransferase OS=Nitrosomonas eu... [more]
GLYA_LEUMM7.532e-3036.91Serine hydroxymethyltransferase OS=Leuconostoc mes... [more]
GLYA_GLOVI7.532e-3035.59Serine hydroxymethyltransferase OS=Gloeobacter vio... [more]
GLYA_BUCAI7.532e-3037.07Serine hydroxymethyltransferase OS=Buchnera aphidi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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