EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_BUCA5 (Serine hydroxymethyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=glyA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 88/234 (37.61%), Postives = 122/234 (52.14%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHD-CTIMSVFARFATNK--SYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DP++   IE EK RQ   +ELI SEN+TS  VM   GS +TN ++EGYPG RYYGG EY+D+ E L  +RA + F  D      NVQ  SGS +NF VYTALL P D I+ + L HGGHL+HG       ++     +  + Y ++E+ G I+Y++L +    +               C    +  RF  +K  +Y V  MAH+  +     +P     A  VT+T   T  G
Sbjct:   12 DPKLWFAIEQEKKRQENHIELIASENYTSNYVMDVQGSQLTNKYAEGYPGKRYYGGCEYVDIIEELAIERAKKLFNAD----YANVQPHSGSQANFSVYTALLNPGDTILGMKLSHGGHLTHG-----SSVNFSGKMYNVISYGVDEN-GEINYEELLRLTKKYKPKMIIGGFSAYSGICNWKKM--RFIADKADAYFVVDMAHVAGLVAAGIYPNPINYAHVVTSTTHKTLAG 233          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEPF (Serine hydroxymethyltransferase 2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 86/232 (37.07%), Postives = 118/232 (50.86%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D ++   +E E  RQ + +ELI SEN+TS +VM+A GSV+TN ++EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL   D I+ + L HGGHL+HG       +S+    +  + Y + ++ G IDYD++E+ A                       F   A    +Y    MAH+  +     +P     AD VTTT   T  G
Sbjct:   12 DADLFAAMEQEAQRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHAGSQANAAVYLALLSAGDTILGMSLAHGGHLTHG-----ASVSSSGKLYNAIQYGI-DANGLIDYDEVERLAVEHKPKMIVAGFSAYSQILDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRG 233          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA2_PSE14 (Serine hydroxymethyltransferase 2 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 85/232 (36.64%), Postives = 116/232 (50.00%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D  +   +  E+ RQ   +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG E++D  E L  +RA + F  D      NVQ  SGS +N  VY ALL+  D ++ + L HGGHL+HG      K+S     +  + Y ++ +TG IDYD++E+ A                       F   A    +Y    MAH+  +     +P     AD VTTT   T  G
Sbjct:   12 DDALLSAMNAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEQLAIERAKQLFGAD----YANVQPHSGSQANAAVYLALLQAGDTVLGMSLAHGGHLTHG-----AKVSFSGKLYNAVQYGIDTTTGLIDYDEVERIAVECQPKMIIAGFSAYSKTLDFPRFREIADKVGAYLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEF5 (Serine hydroxymethyltransferase 1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.532e-30
Identity = 86/232 (37.07%), Postives = 119/232 (51.29%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D ++   +E E  RQ + +ELI SEN+TS +VM+A GSV+TN ++EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL+  D I+ + L HGGHL+HG       +S+    +  + Y + ++ G IDYD++E+ A                       F   A    +Y    MAH+  +     +P     AD VTTT   T  G
Sbjct:   12 DADLFAAMEQEAQRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHAGSQANAAVYLALLQGGDTILGMSLAHGGHLTHG-----AAVSSSGKLYNAIQYGI-DANGLIDYDEVERLAVEHKPKMIVAGFSAYSQILDFPRFREIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRG 233          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_WOLWR (Serine hydroxymethyltransferase OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=glyA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.933e-30
Identity = 70/165 (42.42%), Postives = 97/165 (58.79%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  D E+   IE E  RQ   L+LI SENF S +VM+A GS +TN ++EGYPG RYY G E++D  ESL  +R  + F +       NVQ  SGS +N  V+ +LL P D I+ L L  GGHL+HG        S    +F+++ Y +N+ T  +D D++EK A
Sbjct:   15 LKSFDNEVYQSIEKELQRQKSQLQLIASENFASKAVMEAQGSFLTNKYAEGYPGKRYYCGCEHVDKIESLAIERLCKLFGVK----FANVQPHSGSQANQAVFASLLTPGDTILGLSLSCGGHLTHGAAP-----SLSGKWFKSIQYTVNKDTYLLDMDEIEKLA 170          

HSP 2 Score: 33.8834 bits (76), Expect = 7.933e-30
Identity = 14/25 (56.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLI+AGASAY R  D++R R++ +K
Sbjct:  176 KLIIAGASAYPRKMDFKRFREIADK 200          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_XYLFA (Serine hydroxymethyltransferase OS=Xylella fastidiosa GN=glyA PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.935e-30
Identity = 74/168 (44.05%), Postives = 98/168 (58.33%), Query Frame = 2
Query:  218 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            +A L++ DPE+A  I  E  RQ   +ELI SEN+ S  VMQ  GS +TN ++EGY G RYYGG E +D+AE L  +RA + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG       ++     F  + Y +N   G IDY+ +E  A
Sbjct:    5 DARLDMYDPELAKAIAAEVMRQEDHVELIASENYCSTLVMQVQGSQLTNKYAEGYSGKRYYGGCECVDIAEQLAIERAKQLFGAD----YANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHG-----ANVNVSGKLFNAVQYGVN-GQGLIDYEAVESLA 162          

HSP 2 Score: 26.5646 bits (57), Expect = 7.935e-30
Identity = 10/25 (40.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            K++VAG SAY++  D+ R R + ++
Sbjct:  168 KMVVAGFSAYSQKIDWARFRAIADQ 192          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_STAAT (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 85/232 (36.64%), Postives = 117/232 (50.43%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYN-VGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TN ++EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L   D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD++ K A                       F   A   +   +  MAH+  +     HP   E AD VTTT   T  G
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALGMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_STAA3 (Serine hydroxymethyltransferase OS=Staphylococcus aureus (strain USA300) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 85/232 (36.64%), Postives = 117/232 (50.43%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYN-VGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D  IA+ IE E  RQ   +ELI SENF S +VM+A GSV+TN ++EGYPG RYYGG E++D+ ES+   RA   F  +     VNVQ  SGS +N  VY   L   D ++ ++L HGGHL+HG       ++    F+  + Y +++ T  I+YD++ K A                       F   A   +   +  MAH+  +     HP   E AD VTTT   T  G
Sbjct:    8 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDVTESIAIDRAKALFGAE----HVNVQPHSGSQANMAVYLVALGMGDTVLGMNLSHGGHLTHG-----APVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_MYCLE (Serine hydroxymethyltransferase OS=Mycobacterium leprae GN=glyA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 85/238 (35.71%), Postives = 122/238 (51.26%), Query Frame = 2
Query:  221 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYNVG-RMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            APL  VDP+IA+++  E  RQ   LE+I SENF   SV+QA GSV+TN ++EG PG RYY G E++D+ E++ + RA   F  D      NVQ  SG+ +N  V  AL+ P +R++ LDL +GGHL+HG      +++     +ET  Y ++ +T  ID D +   A  F                  + F   A      +   MAH   +     HP    +AD V+TT+  T  G
Sbjct:    3 APLAEVDPDIAELLGKELGRQRDTLEMIASENFVPRSVLQAQGSVLTNKYAEGLPGRRYYDGCEHVDVVENIARDRAKALFGAD----FANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHG-----MRLNFSGKLYETGFYGVDATTHLIDMDAVRAKALEFRPKVLIAGWSAYPRILDFAAFRSIADEVGAKLWVDMAHFAGLVAVGLHPSPVPHADVVSTTVHKTLGG 231          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_MYCLB (Serine hydroxymethyltransferase OS=Mycobacterium leprae (strain Br4923) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 85/238 (35.71%), Postives = 122/238 (51.26%), Query Frame = 2
Query:  221 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYNVG-RMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            APL  VDP+IA+++  E  RQ   LE+I SENF   SV+QA GSV+TN ++EG PG RYY G E++D+ E++ + RA   F  D      NVQ  SG+ +N  V  AL+ P +R++ LDL +GGHL+HG      +++     +ET  Y ++ +T  ID D +   A  F                  + F   A      +   MAH   +     HP    +AD V+TT+  T  G
Sbjct:    3 APLAEVDPDIAELLGKELGRQRDTLEMIASENFVPRSVLQAQGSVLTNKYAEGLPGRRYYDGCEHVDVVENIARDRAKALFGAD----FANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHG-----MRLNFSGKLYETGFYGVDATTHLIDMDAVRAKALEFRPKVLIAGWSAYPRILDFAAFRSIADEVGAKLWVDMAHFAGLVAVGLHPSPVPHADVVSTTVHKTLGG 231          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BUCA57.532e-3037.61Serine hydroxymethyltransferase OS=Buchnera aphidi... [more]
GLYA2_PSEPF7.532e-3037.07Serine hydroxymethyltransferase 2 OS=Pseudomonas f... [more]
GLYA2_PSE147.532e-3036.64Serine hydroxymethyltransferase 2 OS=Pseudomonas s... [more]
GLYA1_PSEF57.532e-3037.07Serine hydroxymethyltransferase 1 OS=Pseudomonas f... [more]
GLYA_WOLWR7.933e-3042.42Serine hydroxymethyltransferase OS=Wolbachia sp. s... [more]
GLYA_XYLFA7.935e-3044.05Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_STAAT9.837e-3036.64Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_STAA39.837e-3036.64Serine hydroxymethyltransferase OS=Staphylococcus ... [more]
GLYA_MYCLE9.837e-3035.71Serine hydroxymethyltransferase OS=Mycobacterium l... [more]
GLYA_MYCLB9.837e-3035.71Serine hydroxymethyltransferase OS=Mycobacterium l... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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