EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_MICAN (Serine hydroxymethyltransferase OS=Microcystis aeruginosa (strain NIES-843) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 87/236 (36.86%), Postives = 116/236 (49.15%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            L + DP IA I++ E  RQ   LELI SENFTS +VM A GSV+TN ++EG P  RYYGG EYID AE L   R    F  +      NVQ  SG+ +NF V+  LL+P D IM +DL HGGHL+HG       ++    +F  + Y ++  +  +DYD +   A                       F   A    +Y +  +AH+  +     HP    + D VTTT   T  G
Sbjct:    9 LSLTDPAIAGILQKELQRQRDHLELIASENFTSAAVMAAQGSVLTNKYAEGLPKKRYYGGCEYIDEAEQLAIDRVKRLFGAN----HANVQPHSGAQANFAVFLTLLQPGDTIMGMDLSHGGHLTHG-----SPVNVSGKWFRVVQYGVSPESERLDYDLILDIARKEKPKLIICGYSAYSRQIDFEKFRAIADEVGAYLMADIAHIAGLVATGHHPNPLPHCDVVTTTTHKTLRG 235          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_KOSOT (Serine hydroxymethyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 81/232 (34.91%), Postives = 117/232 (50.43%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DPE+ +I+  E  RQ +GLELI SENF S +VM+A+GS +TN ++EGYP  RYYGG +++D AE L ++R  + F         NVQ  SGS +N   Y A+  P D IM + L HGGHL+HG       ++     F  + Y ++  T  +DYD++E+ A                       F   A    +Y +  MAH   +     +P   ++A  VT+T   T  G
Sbjct:    9 DPEVYEIVMKELGRQEEGLELIASENFVSPAVMEAMGSTLTNKYAEGYPRRRYYGGCKFVDEAEQLARERVKKLFNCK----YANVQPHSGSQANMAAYLAVANPGDTIMGMSLSHGGHLTHG-----SPVNFSGKLFNIVSYGVDLETEVLDYDEIERLALEHKPKIIIAGGSAYSRIIDFKRFREIADKVGAYLIVDMAHFAGLVAAGLYPNPVDHAHIVTSTTHKTLRG 231          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DESVM (Serine hydroxymethyltransferase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 91/240 (37.92%), Postives = 119/240 (49.58%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYNVGR-----MAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            L + DPE+   +  E  RQ   LELI SENF S +V QA GSV+T+ ++EGYPG RYYGG E++D+AE+L   RA   F         NVQ  SGS +N  VY A LKP D I+ ++L HGGHL+HG       ++     +  + Y + + TGYIDYD++   A L   +                 FARF       VG      MAH+  +     HP     A   TTT   T  G
Sbjct:    4 LLIQDPEVGRAVTLEIERQTGKLELIASENFVSAAVRQAQGSVLTHKYAEGYPGKRYYGGCEFVDIAENLAIDRAKAIFGCG----YANVQPHSGSQANMGVYFACLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRLYNVVFYGVKKETGYIDYDEV---AALAREHKPTLIVAGASAYPRTIDFARFRAIAD-EVGAKLMVDMAHIAGLVATGLHPTPIGQAHFTTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CORJK (Serine hydroxymethyltransferase OS=Corynebacterium jeikeium (strain K411) GN=glyA PE=3 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 83/242 (34.30%), Postives = 121/242 (50.00%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYNVG-RMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            +Q N PL  +DP++A+ I  E  RQ   LE+I SENF   +V+QA GSV+TN ++EGYPG RYYGG E++D+ E L + RA + F  +      NVQ  +G+ +N  V  +L  P D+IM L L HGGHL+HG       ++     +E   Y ++  T  +D D++ + A                     + F   A      +   MAH   +     HP    +AD V+TT+  T  G
Sbjct:   13 QQHNTPLAELDPQVAEAIAGELRRQRTTLEMIASENFVPRAVLQAQGSVLTNKYAEGYPGRRYYGGCEHVDVIEDLARDRAKQVFGAE----FANVQPHAGAQANAAVLMSLANPGDKIMGLSLAHGGHLTHGMH-----LNFSGKLYEVAAYEVDPETFRLDMDKIREQAIAEKPQVLIAGWSAYPRHQDFAAFKSIADEVGAKLWVDMAHFAGLVAADLHPSPVPHADVVSTTVHKTLGG 245          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA2_PSEU2 (Serine hydroxymethyltransferase 2 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 85/232 (36.64%), Postives = 116/232 (50.00%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D  +   +  E+ RQ   +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG E++D  E L  +RA + F  D      NVQ  SGS +N  VY ALL+  D ++ + L HGGHL+HG      K+S     +  + Y ++ +TG IDYD++E+ A                       F   A    +Y    MAH+  +     +P     AD VTTT   T  G
Sbjct:   12 DDALLSAMNAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEQLAIERARQLFGAD----YANVQPHSGSQANAAVYLALLQAGDTVLGMSLAHGGHLTHG-----AKVSFSGKLYNAVQYGIDTATGLIDYDEVERIAVECQPKMIIAGFSAYSKTLDFPRFRAIADKVGAYLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA2_PSESM (Serine hydroxymethyltransferase 2 OS=Pseudomonas syringae pv. tomato GN=glyA2 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 86/232 (37.07%), Postives = 118/232 (50.86%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D ++   +E E  RQ + +ELI SEN+TS +VM+A GSV+TN ++EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  +GS +N  VY ALL+  D I+ + L HGGHL+HG       +S+    +  + Y + +  G IDYD++E+ A                       F   A    +Y    MAH+  +     +P     AD VTTT   T  G
Sbjct:   12 DADLFAAMEQEALRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHAGSQANSAVYLALLQGGDTILGMSLAHGGHLTHG-----ASVSSSGKLYNAVQYGI-DGNGMIDYDEVERLAVEHKPKMIVAGFSAYSQILDFPRFRAIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRG 233          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA1_PSESM (Serine hydroxymethyltransferase 1 OS=Pseudomonas syringae pv. tomato GN=glyA1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 85/232 (36.64%), Postives = 116/232 (50.00%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D  +   +  E+ RQ   +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG E++D  E L  +RA + F  D      NVQ  SGS +N  VY ALL+  D ++ + L HGGHL+HG      K+S     +  + Y ++ +TG IDYD++E+ A                       F   A    +Y    MAH+  +     +P     AD VTTT   T  G
Sbjct:   12 DDALLSAMNAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEQLAIERARQLFGAD----YANVQPHSGSQANAAVYLALLQAGDTVLGMSLAHGGHLTHG-----AKVSFSGKLYNAVQYGIDTTTGLIDYDEVERIAVECQPKMLIAGFSAYSKTLDFPRFRAIADKVGAYLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJB (Serine hydroxymethyltransferase OS=Synechococcus sp. GN=glyA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 87/238 (36.55%), Postives = 118/238 (49.58%), Query Frame = 2
Query:  221 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            A L   DP +  +I+ E  RQ   LE+I SENFTS +V+ A GSV+TN ++EG PG RYYGG E+ID  E L   RA + F         NVQ  SG+ +NF V+ ALL+P D IM +DL HGGHL+HG       ++    +F  + Y ++  T  ID+DQ+   A                     + F   A    +Y +  +AH+  +     HP      D VTTT   T  G
Sbjct:    2 AILAETDPVVYRLIQQELNRQRDHLEMIASENFTSPAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDEIEQLAIDRAKQLFGAA----HANVQPHSGAQANFAVFLALLQPGDTIMGMDLSHGGHLTHG-----SPVNVSGKWFRVVHYGVHPQTERIDFDQVRDLALQHRPKLIICGYSAYPRAIDFAAFRTIADEVGAYLLADIAHIAGLVATGHHPNPVPLCDVVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 84/232 (36.21%), Postives = 115/232 (49.57%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D EI D+IE E  RQ KG+ELI SEN  S +VM+A+GS +TN ++EGYP  RYYGG   +D  E +   RA E F  +      NVQ  SGS +N  VY A+L+P D ++ +DL HGGHL+HG       ++     F  + Y +++ T  IDY+ + K A                       F   A    +  +  MAH+  +     HP     +D VTTT   T  G
Sbjct:   10 DKEIYDLIEKELVRQQKGIELIASENIVSPAVMEAMGSYLTNKYAEGYPNKRYYGGCHVVDEIEQIAIDRAKELFGAE----HANVQPHSGSQANMAVYFAVLEPGDTVLGMDLSHGGHLTHG-----SPVNFSGKLFNFVSYGVDKETEMIDYENVRKLAIENKPKLIVAGASAYARILDFPKFREIADEVGALLMVDMAHIAGLVAAGVHPSPVPYSDFVTTTTHKTLRG 232          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA3_PSEPF (Serine hydroxymethyltransferase 3 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA3 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 89/247 (36.03%), Postives = 124/247 (50.20%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARF-ATNKSYNVGR---------------MAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            D  +   +  E+ RQ   +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG E++D  E+L  +RA + F  D      NVQ  SGS +N  VY ALL+  D I+ + L HGGHL+HG      K+S+    +  + Y ++  TG IDYD++E+ A                +C    + A F A +K+ +  R               MAH+  +     +P     AD VTTT   T  G
Sbjct:   12 DDALLAAMNAEEQRQEDHIELIASENYTSKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVDKVEALAIERAKQLFGAD----YANVQPHSGSSANSAVYLALLQAGDTILGMSLAHGGHLTHG-----AKVSSSGKLYNAVQYGIDTKTGLIDYDEVERLAV---------------ECKPKMIVAGFSAYSKTLDFPRFRQIADKVGALLFVDMAHVAGLVAAGLYPNPLPYADVVTTTTHKTLRG 234          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_MICAN9.837e-3036.86Serine hydroxymethyltransferase OS=Microcystis aer... [more]
GLYA_KOSOT9.837e-3034.91Serine hydroxymethyltransferase OS=Kosmotoga olear... [more]
GLYA_DESVM9.837e-3037.92Serine hydroxymethyltransferase OS=Desulfovibrio v... [more]
GLYA_CORJK9.837e-3034.30Serine hydroxymethyltransferase OS=Corynebacterium... [more]
GLYA2_PSEU29.837e-3036.64Serine hydroxymethyltransferase 2 OS=Pseudomonas s... [more]
GLYA2_PSESM9.837e-3037.07Serine hydroxymethyltransferase 2 OS=Pseudomonas s... [more]
GLYA1_PSESM9.837e-3036.64Serine hydroxymethyltransferase 1 OS=Pseudomonas s... [more]
GLYA_SYNJB1.285e-2936.55Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_CLOB81.285e-2936.21Serine hydroxymethyltransferase OS=Clostridium bei... [more]
GLYA3_PSEPF1.285e-2936.03Serine hydroxymethyltransferase 3 OS=Pseudomonas f... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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