EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC5 (Serine hydroxymethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.983e-36
Identity = 73/170 (42.94%), Postives = 106/170 (62.35%), Query Frame = 2
Query:  212 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            +++  L   DP++A  I+HE  RQ +GLE+I SENF S +V++A GSV TN ++EGYPG RYYGG E+ D+ E+L + RA + F  +      NVQ  SGS +N   Y ++++P D I+ LDL HGGHL+HG+     K++     +    Y + + T  IDYD+LE  A
Sbjct:    4 RMSLSLAQSDPDVAAAIDHEVLRQHEGLEMIASENFVSRAVLEAAGSVFTNKYAEGYPGRRYYGGCEFADVVENLARDRAKQLFGAE----HANVQPHSGSQANAAAYMSIIQPGDTILGLDLAHGGHLTHGH-----KLNFSGKLYRVASYGVRKDTETIDYDELEAIA 164          

HSP 2 Score: 33.113 bits (74), Expect = 2.983e-36
Identity = 17/49 (34.69%), Postives = 26/49 (53.06%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNKQKL*CWQNGTP*XGWVLLVPSLHF 882
            K+I+ G SAY R++D+ R+R++ +K             G  LLV   HF
Sbjct:  170 KMIIGGGSAYPRIFDFARMRQIADK------------VGAFLLVDMAHF 206          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CHLSY (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.983e-36
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L   DP IAD+IE E  RQ +GLELI SEN+TS++VM+A GSV+TN ++EG PG RYYGG E++D  E L  +RA + F         NVQ  SG+ +N  V+TALL+P D I+ + L HGGHL+HG       ++    ++    Y ++  TG IDYD L   A
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIERACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTHG-----SPVNFSGKWYNVHFYGVDAQTGQIDYDDLASKA 160          

HSP 2 Score: 33.113 bits (74), Expect = 2.983e-36
Identity = 13/35 (37.14%), Postives = 23/35 (65.71%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            +  K   +  KLI +GASAY R+ D+ R+R++ ++
Sbjct:  156 LASKARAIRPKLITSGASAYPRIIDFARMRQIADE 190          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.887e-36
Identity = 81/168 (48.21%), Postives = 102/168 (60.71%), Query Frame = 2
Query:  218 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            N  L   DPEIA  I  E  RQ   LELI SENF S +V++A GSV+TN ++EGYPGARYYGG EY+D+ ES+  +RA E F         NVQ  SG+ +N   Y A L+P D IM + L HGGHL+HG      KI+    +F  +PY + E TG IDYD++   A
Sbjct:    4 NRSLAETDPEIARAIALEITRQGAKLELIASENFVSRAVLEAQGSVLTNKYAEGYPGARYYGGCEYVDIVESVAIRRAKEIFGAG----HANVQPHSGAQANMAAYFAFLEPGDTIMGMRLAHGGHLTHG-----AKINFSGRYFRYVPYGVEEETGRIDYDRMHAIA 162          

HSP 2 Score: 29.261 bits (64), Expect = 3.887e-36
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            KLIV GASAY R  D+ R+R + +
Sbjct:  168 KLIVGGASAYPRELDFARMRAIAD 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.887e-36
Identity = 78/162 (48.15%), Postives = 102/162 (62.96%), Query Frame = 2
Query:  236 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            VDPE+A+ IE E+ARQ   LELI SENF S +VM A GSVMTN ++EG PGARYYGG EY+D+ E L + R  E F  +      NVQ  SG+ +N  VY A L+P   IM ++L HGGHL+HG      K++    +F  + Y +N  T  IDY++L + A
Sbjct:   11 VDPEVAEAIEKEEARQNNKLELIASENFVSRAVMAAQGSVMTNKYAEGLPGARYYGGCEYVDIVEELARDRVKEIFGAE----HANVQPHSGAQANTAVYFAALQPGQTIMGMNLNHGGHLTHG-----SKVNISGKYFNIVDYGVNRDTERIDYEELREIA 163          

HSP 2 Score: 30.8018 bits (68), Expect = 3.887e-36
Identity = 11/25 (44.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            ++IVAGASAY R+ D+++ R++ ++
Sbjct:  169 QMIVAGASAYPRILDFKKFREIADE 193          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPD (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=glyA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 5.059e-36
Identity = 78/165 (47.27%), Postives = 105/165 (63.64%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L++ D E+ + + +E  RQ + LELI SENFTS +VMQA GSVMTN ++EGYPG RYYGG E++D+AE+L + RA + F        VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     +E   Y +   TG ID + +E+ A
Sbjct:    6 LQMQDKEVFEAVVNETVRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFNCS----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SPVNFSGQLYEAHSYGVRRETGCIDMNMVEELA 161          

HSP 2 Score: 30.4166 bits (67), Expect = 5.059e-36
Identity = 12/35 (34.29%), Postives = 24/35 (68.57%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            V E  + +  KLI+ GASAY++ +D++  R++ ++
Sbjct:  157 VEELANKVRPKLIICGASAYSQGFDFKAFREIADR 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 5.059e-36
Identity = 82/165 (49.70%), Postives = 105/165 (63.64%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  D  I D I  E  RQ + LELI SENF S +VM+A GSVMTN ++EGYPG RYYGG E++D+AE+L + RA + F  D     VNVQ  SGS +N  V  A+LKP DRIM LDL HGGHL+HG      K++     FE   Y ++  TG ID +++E+ A
Sbjct:    6 LQRQDKGIFDAITAEVRRQTETLELIASENFASRAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMGVLFAVLKPGDRIMGLDLSHGGHLTHG-----SKVNFSGQLFEAHSYGVDRETGCIDMNKVEEMA 161          

HSP 2 Score: 30.0314 bits (66), Expect = 5.059e-36
Identity = 14/35 (40.00%), Postives = 22/35 (62.86%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            V E    +  KLI+ GASAY++ +D++  R V +K
Sbjct:  157 VEEMALEVRPKLIICGASAYSQGFDFKAFRDVADK 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_PORGI (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.061e-36
Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D  I D+IE E  RQ KG+ELI SENF S  VMQA+GS MTN ++EGYPG RYYGG E +D +E +   R  + +  +   W  NVQ  SG+ +N  V  A L+  D  M L+L HGGHLSHG       +++  I +  + Y L+E TG +DYD +EK A
Sbjct:    4 DSVIFDLIEKEHQRQLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLYGAE---W-ANVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSHG-----SLVNSSGILYRPIGYNLSEETGMVDYDHMEKMA 155          

HSP 2 Score: 34.2686 bits (77), Expect = 5.061e-36
Identity = 13/25 (52.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLI+ G SAY+R +DY+R+R++ +K
Sbjct:  161 KLIIGGGSAYSREWDYKRMREIADK 185          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_PORG3 (Serine hydroxymethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=glyA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.061e-36
Identity = 75/161 (46.58%), Postives = 98/161 (60.87%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D  I D+IE E  RQ KG+ELI SENF S  VMQA+GS MTN ++EGYPG RYYGG E +D +E +   R  + +  +   W  NVQ  SG+ +N  V  A L+  D  M L+L HGGHLSHG       +++  I +  + Y L+E TG +DYD +EK A
Sbjct:    4 DSVIFDLIEKEHQRQLKGIELIASENFVSEQVMQAMGSCMTNKYAEGYPGKRYYGGCEVVDQSEQIAIDRIKQLYGAE---W-ANVQPHSGAQANMAVLLACLEAGDTFMGLNLEHGGHLSHG-----SLVNSSGILYRPIGYNLSEETGMVDYDHMEKMA 155          

HSP 2 Score: 34.2686 bits (77), Expect = 5.061e-36
Identity = 13/25 (52.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLI+ G SAY+R +DY+R+R++ +K
Sbjct:  161 KLIIGGGSAYSREWDYKRMREIADK 185          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAD (Serine hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.063e-36
Identity = 76/165 (46.06%), Postives = 101/165 (61.21%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L   DP IAD+IE E  RQ +GLELI SEN+TS++VM+A GSV+TN ++EG PG RYYGG E++D  E L   RA + F         NVQ  SG+ +N  V+TALL+P D I+ + L HGGHL+HG       ++    ++    Y ++  TG IDYD L   A
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIDRACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTHG-----SPVNFSGKWYNVHFYGVDPQTGQIDYDDLAAKA 160          

HSP 2 Score: 33.4982 bits (75), Expect = 5.063e-36
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = 1
Query:  715 KCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            K   +  KLI +GASAY RL D+ R+R++ ++
Sbjct:  159 KARAIRPKLITSGASAYPRLIDFARMRQIADE 190          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_OENOB (Serine hydroxymethyltransferase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.033e-36
Identity = 90/233 (38.63%), Postives = 124/233 (53.22%), Query Frame = 2
Query:  236 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            +DP++A  +  E+ RQ   +EL+ SENF S +V QA GSV+TN +SEGYPG RYYGGNEYID+AE+L  +RA E F +       NVQ  SGS +NF+ Y A L P D+I+ ++L  GGHL+HG       +S     +E   Y+++  T  +DYD + K A  F  N                 F   A    +Y +  +AH+  +     HP     AD +TTT   T  G
Sbjct:    6 LDPQLAKAVSGEEERQRHNIELVASENFVSKAVRQAQGSVLTNKYSEGYPGKRYYGGNEYIDIAENLAIERAKELFGVS----YANVQPHSGSSANFEAYMAFLHPGDKILGMNLDSGGHLTHG-----ASVSFSGKMYEAQSYKVDSETELLDYDAILKQAKEFKPNLIIAGASAYSRTIDFQAFRDIADEVNAYLMVDIAHIAGLIAAGLHPSPVGLADIITTTTHKTLRG 229          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_ACIC52.983e-3642.94Serine hydroxymethyltransferase OS=Acidobacterium ... [more]
GLYA_CHLSY2.983e-3646.06Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_DESAP3.887e-3648.21Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_SYNWW3.887e-3648.15Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]
GLYA_CHLPD5.059e-3647.27Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_CHLPB5.059e-3649.70Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_PORGI5.061e-3646.58Serine hydroxymethyltransferase OS=Porphyromonas g... [more]
GLYA_PORG35.061e-3646.58Serine hydroxymethyltransferase OS=Porphyromonas g... [more]
GLYA_CHLAD5.063e-3646.06Serine hydroxymethyltransferase OS=Chloroflexus ag... [more]
GLYA_OENOB7.033e-3638.63Serine hydroxymethyltransferase OS=Oenococcus oeni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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