EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 7.033e-36
Identity = 98/233 (42.06%), Postives = 121/233 (51.93%), Query Frame = 2
Query:  236 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK-SYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            VDPE A  IE E  RQ   LELI SEN  S +VM A GSVMTN ++EGYPG RYYGG E++D+AE+L + RA E F+ D      NVQ  SGS +N  VY ALL+P D ++ +DL HGGHL+HG       +S     F  + Y + E TG IDYDQL   A                         + A    +Y +  MAH+  +     HP     AD VTTT   T  G
Sbjct:    9 VDPEAAKAIEQELDRQQFTLELIASENIASPAVMAAQGSVMTNKYAEGYPGHRYYGGCEFVDVAENLARDRAKELFQAD----YANVQPHSGSQANMGVYFALLEPGDTVLGMDLSHGGHLTHG-----SPVSFSGRIFNFIHYGVKEKTGTIDYDQLRSLAKEHKPKLIVAGASAYPRIIDFPELEKIARETGAYLMVDMAHIAGLVAAGEHPSPLPYADVVTTTTHKTLRG 232          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAA (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.589e-36
Identity = 76/165 (46.06%), Postives = 102/165 (61.82%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L   DP IAD+IE E  RQ +GLELI SEN+TS++VM+A GSV+TN ++EG PG RYYGG E++D  E L  +RA + F         NVQ  SG+ +N  V+TALL+P D I+ + L HGGHL+HG       ++    ++    Y ++  TG IDYD L   A
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIERACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTHG-----SPVNFSGKWYNVHFYGVDAQTGQIDYDDLASKA 160          

HSP 2 Score: 31.5722 bits (70), Expect = 8.589e-36
Identity = 12/35 (34.29%), Postives = 22/35 (62.86%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            +  K   +  KLI +G SAY R+ D+ R+R++ ++
Sbjct:  156 LASKARAIRPKLITSGVSAYPRIIDFARMRQIADE 190          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_SYNFM (Serine hydroxymethyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=glyA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.200e-35
Identity = 93/236 (39.41%), Postives = 130/236 (55.08%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            LE +DPEIAD+I  E+ RQ   LELI SENF S +V +A GSV+TN ++EGYPG RYYGG E++DMAE L Q+RA + F  D E    NVQ  SGS +N  ++ A+L+P D ++ +DL  GGHL+HG       +S     +  + Y + + T  ID+DQ+ + A                     + F + A    +Y +  MAH+  + C   HP    +AD VT+T   T  G
Sbjct:    4 LERIDPEIADVICEEEKRQRGKLELIASENFVSEAVREAQGSVLTNKYAEGYPGKRYYGGCEFVDMAERLAQERAKKLF--DAEY--ANVQPHSGSQANMAIFFAVLQPGDTVLGMDLRQGGHLTHG-----SPVSFSGKLYNVVSYGVRKDTEQIDFDQVARLAREHRPKLIIAGASAYPRIIDFARFGQIAKEIAAYLMVDMAHIAGLVCSGLHPSPVPHADFVTSTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CHLCH (Serine hydroxymethyltransferase OS=Chlorobium chlorochromatii (strain CaD3) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.457e-35
Identity = 79/165 (47.88%), Postives = 106/165 (64.24%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  D E+   I +E  RQ + LELI SENFTS +VMQA GSVMTN ++EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  ++LKP D+IM LDL HGGHL+HG       ++     FE   Y ++  TG ID +++E+ A
Sbjct:    6 LQKQDAEVFASIANETKRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFSVLKPGDKIMGLDLSHGGHLTHG-----SSVNFSGQMFEAHSYGVDRETGCIDMNKVEEMA 161          

HSP 2 Score: 30.0314 bits (66), Expect = 1.457e-35
Identity = 13/35 (37.14%), Postives = 22/35 (62.86%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            V E    +  KLI+ GASAY++ +D++  R + +K
Sbjct:  157 VEEMAMQVRPKLIIGGASAYSQGFDFKAFRAIADK 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSL (Serine hydroxymethyltransferase OS=Geobacter sulfurreducens GN=glyA PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.567e-35
Identity = 93/237 (39.24%), Postives = 131/237 (55.27%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK--SYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            LE  DP++A+ I HE  RQ   LELI SENF S +V++A GSVMTN ++EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  ID++++E+ A L             +  TI     R   +K  +  +  MAH+  +     HP     A+ VTTT   T  G
Sbjct:    4 LETFDPQVAEAIRHETERQEYNLELIASENFVSEAVLEAQGSVMTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAD----HANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLA-LEHKPKMIVVGASAYPRTIDFAAFRIIADKVGAVIMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.897e-35
Identity = 80/165 (48.48%), Postives = 106/165 (64.24%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  D E+ + I  E  RQ + LELI SENFTS +VMQA GSVMTN ++EGYPG RYYGG E++D+AE+L + RA + F  D     VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     +E   Y ++  TG ID +++E+ A
Sbjct:    6 LQKQDSELFEAIAKETGRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SSVNFSGQMYEAHSYGVDRETGCIDMNKVEELA 161          

HSP 2 Score: 27.335 bits (59), Expect = 1.897e-35
Identity = 11/25 (44.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLI+ GASAY++ +D +  R + +K
Sbjct:  167 KLIICGASAYSQGFDVKAFRVIADK 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA1_PSEPF (Serine hydroxymethyltransferase 1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.899e-35
Identity = 73/165 (44.24%), Postives = 103/165 (62.42%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  DP IA +I+ E+ RQ   LELI SEN+ S  V+QA GS++TN ++EGYPG RYYGG + +D  E+L  +RA + F  +     VNVQ  SGS +N  V+ A+L+P DRI+ + L HGGHL+HG       ++    FF+   Y L + +  +DYDQ+E  A
Sbjct:    3 LQNFDPAIARLIDRERNRQETHLELIASENYVSEEVLQAQGSLLTNKYAEGYPGRRYYGGCKVVDEIENLAIERARKLFGCE----YVNVQPHSGSQANQAVFLAVLEPGDRILGMSLAHGGHLTHG-----ASVNFSGKFFQAFTYGLEKDSETLDYDQMEDLA 158          

HSP 2 Score: 37.7354 bits (86), Expect = 1.899e-35
Identity = 14/25 (56.00%), Postives = 22/25 (88.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            K+I+AGASAY+R+ D+ R RK+C++
Sbjct:  164 KMIIAGASAYSRVIDFPRFRKICDE 188          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.491e-35
Identity = 91/239 (38.08%), Postives = 125/239 (52.30%), Query Frame = 2
Query:  218 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            N  L   DPE+A  IE E  RQ + +ELI SENF S +V++A GS++TN ++EGYPG RYYGG E++D+AESL   RA + F  D      NVQ  SG+ +NF VY ALL+P D+I+ ++L HGGHL+HG       ++    +F  + Y + E TG I+Y++L + A                           A    +Y    MAH+  +     H      AD VTTT   T  G
Sbjct:    3 NGKLAQTDPELAKAIELEHQRQQRNIELIASENFVSPAVLEAQGSILTNKYAEGYPGKRYYGGCEFVDIAESLAISRAKKLFGAD----HANVQPHSGAQANFAVYFALLQPGDKILGMNLAHGGHLTHG-----SPVNVSGKYFNVVAYGVEEDTGCINYEKLREIALQEKPKMIVAGASAYARAIDFKKIGEIAKEIDAYFFVDMAHIAGLVAAGLHQSPVPYADVVTTTTHKTLRG 232          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_PROVI (Serine hydroxymethyltransferase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.192e-35
Identity = 79/165 (47.88%), Postives = 106/165 (64.24%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L++ D E+ + I  E  RQ + LELI SENFTS +VMQA GSVMTN ++EGYPG RYYGG E++D+AE+L + RA + F  +     VNVQ  SGS +N  V  ++LKP D IM LDL HGGHL+HG       ++     ++   Y ++  TG ID +Q+EK A
Sbjct:    6 LKMQDREVFEAIALETGRQMETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFSVLKPGDCIMGLDLSHGGHLTHG-----SSVNFSGQMYKAHAYGVDGETGIIDMNQVEKMA 161          

HSP 2 Score: 28.8758 bits (63), Expect = 4.192e-35
Identity = 10/25 (40.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            +LI+ GASAY++ +D++  R++ +K
Sbjct:  167 RLIICGASAYSQGFDFKAFREIADK 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_PROA2 (Serine hydroxymethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.192e-35
Identity = 79/165 (47.88%), Postives = 103/165 (62.42%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  D EI D I +E  RQ + LELI SENF S +VM+A GSVMTN ++EGYPG RYYGG E++D+AE L ++RA + F        VNVQ  SGS +N  V  ++LKP D IM LDL HGGHL+HG       ++     F+   Y ++  TG ID D++E  A
Sbjct:    6 LQKQDKEIFDAISNEVLRQTETLELIASENFASKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAEDLARERAKKLFGCQ----YVNVQPHSGSSANMGVLFSVLKPGDTIMGLDLSHGGHLTHG-----SSVNFSGQLFDAHSYGVDRETGLIDMDRVEDMA 161          

HSP 2 Score: 28.8758 bits (63), Expect = 4.192e-35
Identity = 10/25 (40.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            +LI+ GASAY++ +D++  R++ +K
Sbjct:  167 RLIICGASAYSQGFDFKAFRQIADK 191          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_DESAA7.033e-3642.06Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_CHLAA8.589e-3646.06Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_SYNFM1.200e-3539.41Serine hydroxymethyltransferase OS=Syntrophobacter... [more]
GLYA_CHLCH1.457e-3547.88Serine hydroxymethyltransferase OS=Chlorobium chlo... [more]
GLYA_GEOSL1.567e-3539.24Serine hydroxymethyltransferase OS=Geobacter sulfu... [more]
GLYA_PELPB1.897e-3548.48Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA1_PSEPF1.899e-3544.24Serine hydroxymethyltransferase 1 OS=Pseudomonas f... [more]
GLYA_DESRM3.491e-3538.08Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_PROVI4.192e-3547.88Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_PROA24.192e-3547.88Serine hydroxymethyltransferase OS=Prosthecochlori... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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