EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_CHLL2 (Serine hydroxymethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=glyA PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 4.192e-35
Identity = 78/165 (47.27%), Postives = 105/165 (63.64%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L + D E+ + I  E  RQ + LELI SENFTS +VMQA GS+MTN ++EGYPG RYYGG E++D+AE+L + RA + F        VNVQ  SGS +N  V  ++LKP DRIM LDL HGGHL+HG       ++     F+   Y ++  TG ID +++E+ A
Sbjct:    6 LRMQDKEVFEAIAGETLRQTETLELIASENFTSRAVMQACGSLMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCQ----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTHG-----SPVNFSGQLFDAHSYGVDRETGCIDMNRVEELA 161          

HSP 2 Score: 30.0314 bits (66), Expect = 4.192e-35
Identity = 11/25 (44.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLI+ GASAY++ +D++  R++ +K
Sbjct:  167 KLIICGASAYSQGFDFKAFREIADK 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_SOLUE (Serine hydroxymethyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.559e-35
Identity = 94/246 (38.21%), Postives = 134/246 (54.47%), Query Frame = 2
Query:  197 VTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNK-SYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            +T  ++++  L  VDPEI   I+HE ARQ   LELI SENFTS +V++A GSV TN ++EGYPG RYYGG EY D+ E+L ++RA + F  +     VNVQ  SGS +N   Y A++ P D +M L+L HGGHL+HG+  +    +     ++ +PY + +    IDYD++EK A                     + F + A    +  +  MAH+  +     HP   E AD VT+T   T  G
Sbjct:    1 MTESQRMSRTLAEVDPEIYQAIQHETARQDGQLELIASENFTSEAVLEATGSVFTNKYAEGYPGKRYYGGCEYTDVVENLARERASKLFGAEY----VNVQPHSGSQANQAAYGAVVSPGDTVMGLNLAHGGHLTHGHALNFSGKT-----YKIVPYNVRKEDELIDYDEVEKLAREHQPKMIIAGASAYPRIIDFARFRKIADAVGAVFLVDMAHISGLVAAGVHPNPCEFADIVTSTTHKTLRG 237          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_GEOMG (Serine hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glyA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.559e-35
Identity = 91/236 (38.56%), Postives = 125/236 (52.97%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYNV-GRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            LE  DP +A+ I HE  RQ   LELI SENF S +VM+A GSV+TN ++EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N  VY ++LKP D I+ ++L HGGHL+HG       ++    FF  +PY +++ T  ID++++E+ A                     + F   A      V   MAH+  +     HP     A+ VTTT   T  G
Sbjct:    4 LETFDPAVAEAIRHETERQEYNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAD----HANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHLTHG-----SPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKLIVVGASAYPRVLDFAAFRAIADKVGALVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DESDA (Serine hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.119e-35
Identity = 77/161 (47.83%), Postives = 97/161 (60.25%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            DPEIA  I  E  RQ   LELI SEN  S +V +A GSV+TN ++EGYPG RYYGG EY+DM E+L Q+RA   F    +   VNVQ  SGS +N   Y A+LKP D I+ +DL HGGHL+HG       ++     F+ + Y +   TG IDYD +   A
Sbjct:    8 DPEIAKAIALESQRQMGKLELIASENIVSTAVREAQGSVLTNKYAEGYPGKRYYGGCEYVDMVETLAQERAKLLF----DAQYVNVQPHSGSQANMAAYLAVLKPGDTILGMDLSHGGHLTHG-----SPVNFSGRLFKIISYGVQRETGRIDYDDVAAKA 159          

HSP 2 Score: 29.261 bits (64), Expect = 7.119e-35
Identity = 14/35 (40.00%), Postives = 19/35 (54.29%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNK 810
            V  K       +IVAGASAY R  D+ R R + ++
Sbjct:  155 VAAKAREHKPSVIVAGASAYPRAIDFARFRAIADE 189          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.776e-35
Identity = 91/236 (38.56%), Postives = 123/236 (52.12%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYNV-GRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            LE  DP +A++I HE  RQ   LELI SENF S +V++A GSV+TN ++EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++ E+ A                       F R A      V   MAH+  +     HP     A+ VTTT   T  G
Sbjct:    4 LETFDPAVAEVIRHETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.016e-34
Identity = 93/232 (40.09%), Postives = 125/232 (53.88%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DP + +I E E  RQ   LE+I SENFTS +VM+A+GSV TN ++EGYPG RYYGG EY D  E L  +RA E F  +     VNVQ  SGS +N  VY ALLKP+D+I+ +DL HGGHL+HG      K++A    +++  Y +N+  G+IDYD++   A +                     F   A    +  +  +AH+  +     HP  F   D VTTT   T  G
Sbjct:    8 DPAVYEIFEKELQRQTDHLEMIASENFTSPAVMEAMGSVFTNKYAEGYPGKRYYGGCEYADAIEELAIQRAKELFGCE----FVNVQPHSGSQANQGVYLALLKPYDKILGMDLSHGGHLTHG-----AKVNASGKIYQSFFYGVNDE-GWIDYDRVLDIAKIVKPKLIVCGASAYPRVIDFKKFREIADEVGALLMADIAHIAGLVAAGEHPSPFPYCDVVTTTTHKTLRG 229          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_AYWBP (Serine hydroxymethyltransferase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=glyA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.016e-34
Identity = 91/233 (39.06%), Postives = 125/233 (53.65%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFE-NADGVTTTLTNTSWG 931
            D EI D+IE EKARQ + + LI SENF S +V+ A GS++TN ++EGYP ARYY G + +D  E +  +RA + F         NVQ  SGS +N  V+ ALLKP D+I+ L L  GGHL+HG+     K+S    F+E   Y +N  T  +DYD++ K A                       F + A    +Y +  +AH+  +  C  HP  FE NAD VT+T+  T  G
Sbjct:   24 DQEIFDLIEQEKARQKENILLIASENFVSQAVLDAQGSILTNKYAEGYPQARYYNGCKNVDQIEKIAIQRATKLFGAK----YANVQPHSGSQANMGVFQALLKPGDKILGLSLMDGGHLTHGH-----KLSFSGGFYEAHFYNVNPQTEMLDYDEIRKVALAVKPKLIIAGYSAYSKTINFKKFRQIADEVNAYLIADIAHIAGLVACGLHPCPFEANADVVTSTMHKTLRG 247          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.572e-34
Identity = 75/161 (46.58%), Postives = 100/161 (62.11%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            DPEI D+I+ E  RQ  GLELI SENF S +VM+A+G+ +TN ++EG PG RYYGG E +D AE L ++RA E +  D   W VNVQ  +G+ +N  VY  LL P D  + LDL HGGHL+HG       ++   I +E   Y + E TG ID +++   A
Sbjct:    8 DPEIHDVIQKEVQRQNDGLELIASENFASRAVMEAMGTALTNKYAEGLPGKRYYGGCEVVDRAEELARERAKELYDCD---W-VNVQPHAGAQANSAVYLTLLDPGDTFLGLDLSHGGHLTHG-----SPVNFSGILYEAEYYGVEEETGRIDMNRVRDRA 159          

HSP 2 Score: 31.187 bits (69), Expect = 1.572e-34
Identity = 14/43 (32.56%), Postives = 24/43 (55.81%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCNKQKL*CWQN 834
            V ++   +  K+I  GASAY R +DYE  R++ ++     W +
Sbjct:  155 VRDRAKEVQPKMISIGASAYPRDFDYEAFREIADEVGAFLWMD 197          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA2_COLP3 (Serine hydroxymethyltransferase 2 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.573e-34
Identity = 75/161 (46.58%), Postives = 99/161 (61.49%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D  I   +E E  RQ   +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG E++D+ E L   RA E F  D      NVQ  SGS +N  V+ ALLKP + ++ + L HGGHL+HG      K+S     +  + Y LNE+TG IDY+++E+ A
Sbjct:   12 DDSIWQAMEQEDKRQQDHVELIASENYTSARVMQAQGSQLTNKYAEGYPGKRYYGGCEHVDVIEQLAIDRAKELFGAD----YANVQPHSGSQANAAVFMALLKPGETVLGMSLAHGGHLTHG-----SKVSFSGKIYNAVQYGLNEATGEIDYEEVERLA 163          

HSP 2 Score: 30.0314 bits (66), Expect = 1.573e-34
Identity = 11/24 (45.83%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            K+I+AG SAY+R+ D++R R + +
Sbjct:  169 KMIIAGFSAYSRVVDWQRFRDIAD 192          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_HALHL (Serine hydroxymethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glyA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.732e-34
Identity = 91/232 (39.22%), Postives = 126/232 (54.31%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            DPE+A  IE E+ RQ   +ELI SEN+ S  VM+A GSV+TN ++EGYPG RYYGG E++D+AE L   RA + F  D      NVQ  SGS +N  V+ ALLKP D I+ + L HGGHL+HG      K++     F  + Y +N+  G IDYD++++ AT                    +   + A +  +Y V  MAH+  +     +P    +AD VT+T   T  G
Sbjct:   12 DPELAAAIEDERQRQEDHIELIASENYASPRVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVAEQLAIDRAKQLFGAD----YANVQPHSGSQANAAVFHALLKPGDTILGMSLDHGGHLTHG-----AKVNFSGKLFNAVQYGINDD-GQIDYDEIQRLATEHQPKMVIGGFSAYSQVVDWARLRQIADSVGAYLVVDMAHIAGLVAAGVYPSPIPHADAVTSTTHKTLRG 233          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLL24.192e-3547.27Serine hydroxymethyltransferase OS=Chlorobium limi... [more]
GLYA_SOLUE4.559e-3538.21Serine hydroxymethyltransferase OS=Solibacter usit... [more]
GLYA_GEOMG4.559e-3538.56Serine hydroxymethyltransferase OS=Geobacter metal... [more]
GLYA_DESDA7.119e-3547.83Serine hydroxymethyltransferase OS=Desulfovibrio d... [more]
GLYA_GEOSM7.776e-3538.56Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_NITSB1.016e-3440.09Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_AYWBP1.016e-3439.06Serine hydroxymethyltransferase OS=Aster yellows w... [more]
GLYA_SALRD1.572e-3446.58Serine hydroxymethyltransferase OS=Salinibacter ru... [more]
GLYA2_COLP31.573e-3446.58Serine hydroxymethyltransferase 2 OS=Colwellia psy... [more]
GLYA_HALHL1.732e-3439.22Serine hydroxymethyltransferase OS=Halorhodospira ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
back to top