EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_FLAJ1 (Serine hydroxymethyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.048e-34
Identity = 74/162 (45.68%), Postives = 99/162 (61.11%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 724
            D +I D+I+ EK RQ  GLELI SENF S  VM+A GSV+TN ++EGYPG RYYGG E +D+ E +   RA E F  +      NVQ  SGS +N  VY A L P D I+  DL HGGHL+HG       ++     +  + Y ++  TG +DYD++++ AT
Sbjct:    4 DEQIFDLIQEEKDRQIHGLELIASENFVSDEVMEAAGSVLTNKYAEGYPGKRYYGGCEVVDVIEQIAIDRAKELFGAE----YANVQPHSGSQANTAVYHACLNPGDTILGFDLSHGGHLTHG-----SPVNFSGRLYRPVFYGVDAETGRLDYDKIQEIAT 156          

HSP 2 Score: 31.187 bits (69), Expect = 2.048e-34
Identity = 13/24 (54.17%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            KLI+AGASAY+R  D+ R R++ +
Sbjct:  161 KLIIAGASAYSRDMDFARFRQIAD 184          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DESHY (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glyA PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.049e-34
Identity = 69/161 (42.86%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            DPE+A+ I  E+ RQ   +ELI SENF S +VM A GSV+TN ++EGYPG RYYGG EY+D+ E L ++R  + F  +      NVQ  SG+ +N  VY A+LKP D ++ ++L HGGHL+HG       ++   +++  + Y ++++T  IDYD + + A
Sbjct:   12 DPEVAEAIAQEEQRQRYKIELIASENFVSRAVMAAQGSVLTNKYAEGYPGKRYYGGCEYVDIVEDLARERVKKLFGAE----HANVQPHSGAQANTAVYFAMLKPGDTVLGMNLSHGGHLTHG-----SPVNISGMYYNFVAYGVDQATERIDYDVVRQLA 163          

HSP 2 Score: 32.7278 bits (73), Expect = 2.049e-34
Identity = 14/25 (56.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLIVAGASAY R  D+ R+R++ ++
Sbjct:  169 KLIVAGASAYPRQIDFARLREIADE 193          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_ERWT9 (Serine hydroxymethyltransferase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=glyA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.668e-34
Identity = 76/161 (47.20%), Postives = 104/161 (64.60%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D ++   +E EK RQ + +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG E++D+ E L  +RA E F  D      NVQ  SGS +NF VYTALL+P D I+ ++L HGGHL+HG       ++     +  +PY ++E TG IDY++L + A
Sbjct:   12 DADLWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEHVDIVEQLAIERAKELFGAD----YANVQPHSGSQANFAVYTALLQPGDTILGMNLAHGGHLTHG-----SPVNLSGKLYNVIPYGIDE-TGKIDYNELAELA 162          

HSP 2 Score: 27.335 bits (59), Expect = 2.668e-34
Identity = 10/24 (41.67%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            K+IV G SAY+ + D+E++R++ +
Sbjct:  168 KMIVGGFSAYSGICDWEKMREIAD 191          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_STRAW (Serine hydroxymethyltransferase OS=Streptomyces avermitilis GN=glyA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.955e-34
Identity = 91/240 (37.92%), Postives = 125/240 (52.08%), Query Frame = 2
Query:  215 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            LN PL  +DP++A  ++ E  RQ   LE+I SENF  V+VM+A GSV+TN ++EGYPG RYYGG E++D+ E +   R  E F  +      NVQ  SG+ +N     ALLKP D IM L+L HGGHL+HG      KI+     +  + Y ++E+TG +D  ++EK A                     + F R A    +Y +  MAH   +     HP    +A  VTTT   T  G
Sbjct:    4 LNTPLHELDPDVAAAVDAELNRQQSTLEMIASENFAPVAVMEAQGSVLTNKYAEGYPGRRYYGGCEHVDVVEQIAIDRVKELFGAE----HANVQPHSGAQANAAAMFALLKPGDTIMGLNLAHGGHLTHG-----MKINFSGKLYNVVAYHVDETTGQVDMAEVEKLAKESRPKLIVAGWSAYPRQLDFAAFRRIADEVGAYLMVDMAHFAGLVAAGLHPNPVPHAHVVTTTTHKTLGG 234          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_NITMU (Serine hydroxymethyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=glyA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.476e-34
Identity = 74/165 (44.85%), Postives = 98/165 (59.39%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            LE VDP++   I+ E  RQ + +ELI SEN+ S +VMQA GSV+TN ++EGYPG RYYGG EY+D+ E L   R    F  D E   VNVQ  SGS +N  VY   LKP D ++ + L HGGHL+HG       ++     F  + Y L   T  +DYD++ + A
Sbjct:    8 LETVDPDLWQAIKGEMQRQEEYIELIASENYASPAVMQAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRVRALF--DAEY--VNVQPHSGSQANAAVYLTALKPGDTLLGMSLAHGGHLTHG-----ASVNLSGKIFNAVSYGLRSDTEELDYDEVARLA 163          

HSP 2 Score: 34.2686 bits (77), Expect = 3.476e-34
Identity = 16/34 (47.06%), Postives = 22/34 (64.71%), Query Frame = 1
Query:  706 VGEKCHPLXXKLIVAGASAYARLYDYERIRKVCN 807
            V    H    KLIVAGASAY+ + D++R RK+ +
Sbjct:  159 VARLAHEHKPKLIVAGASAYSLVIDWKRFRKIAD 192          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.859e-34
Identity = 89/229 (38.86%), Postives = 119/229 (51.97%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTT 910
            L+  DPEI  +I+ E+ RQ   + LI SEN+ S +V++A GS++TN +SEGYPG RYY G + ID  ES+   RA   F  +     VNVQ  SGSP+N  VY A LKP D I+ + LPHGGHL+HG      K+S    +F  + Y LNE  G +DY+++   A                     + F   A    +  +  MAH   +     HP  F  AD VTTT
Sbjct:   13 LQQQDPEIFSLIQQEEVRQHNKIRLIASENYVSSAVLEATGSILTNKYSEGYPGKRYYEGQQLIDQIESIAIDRAKAVFGAE----HVNVQPYSGSPANMAVYLAFLKPGDTILGMALPHGGHLTHG-----SKVSISGKYFNAVSYALNEE-GILDYEEIRNKALECKPKILIAGHSAYPRILDFAKFREIADEVGALLMVDMAHFAGLVAGGVHPSPFPYADVVTTT 231          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DESHD (Serine hydroxymethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glyA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.527e-34
Identity = 69/161 (42.86%), Postives = 102/161 (63.35%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            DPE+A+ I  E+ RQ   +ELI SENF S +VM A GSV+TN ++EGYPG RYYGG EY+D+ E L ++R  + F  +      NVQ  SG+ +N  VY A+LKP D ++ ++L HGGHL+HG       ++   +++  + Y +++ T  IDYD + + A
Sbjct:   12 DPEVAEAIAQEEQRQRYKIELIASENFVSRAVMAAQGSVLTNKYAEGYPGKRYYGGCEYVDIVEDLARERVKKLFGAE----HANVQPHSGAQANTAVYFAMLKPGDTVLGMNLSHGGHLTHG-----SPVNISGMYYNFVAYGVDQVTERIDYDVVRQLA 163          

HSP 2 Score: 32.7278 bits (73), Expect = 4.527e-34
Identity = 14/25 (56.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            KLIVAGASAY R  D+ R+R++ ++
Sbjct:  169 KLIVAGASAYPRQIDFARLREIADE 193          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DEHSC (Serine hydroxymethyltransferase OS=Dehalococcoides sp. (strain CBDB1) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.527e-34
Identity = 72/165 (43.64%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  DP + + I  E  R  + ++LI SEN+TS +V++A GSV TN ++EGYPG RYY G EY D  E L   RA   F  +      NVQ  SG+ +N   Y A++KP D IM L L HGGHL+HG      K++     +  + Y LN  T  IDYD LEK A
Sbjct:    4 LKTSDPAVYNAIMQETTRLKETIDLIASENYTSKAVLEAQGSVFTNKYAEGYPGKRYYAGCEYADAVEELAIDRAKTLFHAE----HANVQPHSGAQANMAAYFAMVKPGDTIMGLTLSHGGHLTHG-----SKVNFTGKLYHVIEYGLNAETERIDYDNLEKLA 159          

HSP 2 Score: 36.5798 bits (83), Expect = 4.527e-34
Identity = 14/25 (56.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            ++IV GASAY R+ D+ER R +C+K
Sbjct:  165 RMIVTGASAYPRILDFERFRAICDK 189          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DEHSB (Serine hydroxymethyltransferase OS=Dehalococcoides sp. (strain BAV1) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.527e-34
Identity = 72/165 (43.64%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  DP + + I  E  R  + ++LI SEN+TS +V++A GSV TN ++EGYPG RYY G EY D  E L   RA   F  +      NVQ  SG+ +N   Y A++KP D IM L L HGGHL+HG      K++     +  + Y LN  T  IDYD LEK A
Sbjct:    4 LKTSDPAVYNAIMQETTRLKETIDLIASENYTSKAVLEAQGSVFTNKYAEGYPGKRYYAGCEYADAVEELAIDRAKTLFHAE----HANVQPHSGAQANMAAYFAMVKPGDTIMGLTLSHGGHLTHG-----SKVNFTGKLYHVIEYGLNAETERIDYDNLEKLA 159          

HSP 2 Score: 36.5798 bits (83), Expect = 4.527e-34
Identity = 14/25 (56.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            ++IV GASAY R+ D+ER R +C+K
Sbjct:  165 RMIVTGASAYPRILDFERFRAICDK 189          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA4_COLP3 (Serine hydroxymethyltransferase 4 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=glyA4 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.896e-34
Identity = 75/161 (46.58%), Postives = 97/161 (60.25%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D  I   +E E  RQ   +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG E++D+ E L   RA E F  D      NVQ  SGS +N  V+ ALLKP + ++ + L HGGHL+HG      K+S     +  + Y LNE TG IDYD++ + A
Sbjct:   12 DDSIWQAMEQEDKRQQDHVELIASENYTSARVMQAQGSQLTNKYAEGYPGKRYYGGCEHVDVIEQLAIDRAKELFGAD----YANVQPHSGSQANAAVFMALLKPGETVLGMSLAHGGHLTHG-----SKVSFSGKIYNAVQYGLNEVTGEIDYDEVARLA 163          

HSP 2 Score: 30.0314 bits (66), Expect = 5.896e-34
Identity = 11/24 (45.83%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            K+I+AG SAY+R+ D++R R + +
Sbjct:  169 KMIIAGFSAYSRVVDWQRFRDIAD 192          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_FLAJ12.048e-3445.68Serine hydroxymethyltransferase OS=Flavobacterium ... [more]
GLYA_DESHY2.049e-3442.86Serine hydroxymethyltransferase OS=Desulfitobacter... [more]
GLYA_ERWT92.668e-3447.20Serine hydroxymethyltransferase OS=Erwinia tasmani... [more]
GLYA_STRAW2.955e-3437.92Serine hydroxymethyltransferase OS=Streptomyces av... [more]
GLYA_NITMU3.476e-3444.85Serine hydroxymethyltransferase OS=Nitrosospira mu... [more]
GLYA_DESPS3.859e-3438.86Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_DESHD4.527e-3442.86Serine hydroxymethyltransferase OS=Desulfitobacter... [more]
GLYA_DEHSC4.527e-3443.64Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_DEHSB4.527e-3443.64Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA4_COLP35.896e-3446.58Serine hydroxymethyltransferase 4 OS=Colwellia psy... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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