EY659990

Overview
NameEY659990
Unique NameEY659990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.583e-34
Identity = 90/236 (38.14%), Postives = 122/236 (51.69%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATNKSYNV-GRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            LE  DP +A++I  E  RQ   LELI SENF S +V++A GSV+TN ++EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N  VY ++LKP D ++ ++L HGGHL+HG       ++     F  +PY +++ T  IDY++ E+ A                       F R A      V   MAH+  +     HP     A+ VTTT   T  G
Sbjct:    4 LETFDPAVAEVIRQETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPRIIDFEAFRRIADKVGAVVMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRG 230          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 7.678e-34
Identity = 74/161 (45.96%), Postives = 101/161 (62.73%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            DPE+++ +E E+ RQ   +ELI SEN+ S  V++A GSV+TN ++EGYPG RYYGG E++D AE L  +RA + F  D      NVQ  SGS +N  VY ALL+P D I+ + L HGGHL+HG      K++     F  + Y +   TG +DY QLE+ A
Sbjct:   12 DPELSEAMEAERRRQEDHIELIASENYASPRVLEAQGSVLTNKYAEGYPGKRYYGGCEHVDEAERLAIERAKQLFGAD----YANVQPHSGSQANAAVYLALLQPGDTILGMSLDHGGHLTHG-----AKVNFSGRLFNAVQYGVCPDTGELDYAQLERLA 163          

HSP 2 Score: 29.261 bits (64), Expect = 7.678e-34
Identity = 10/24 (41.67%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            K+I+ G SAY+R+ D++R+R + +
Sbjct:  169 KMIIGGFSAYSRVVDWQRLRDIAD 192          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_ELUMP (Serine hydroxymethyltransferase OS=Elusimicrobium minutum (strain Pei191) GN=glyA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.680e-34
Identity = 70/165 (42.42%), Postives = 102/165 (61.82%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  D  + D +E E  RQ   LELI SENFTS+SVM+A GS++TN ++EGYPG RYYGG E++DM E+L  +RA + F  +      NVQ  SG+ +N   Y AL+ P D ++ L+L HGGHL+HG+      ++    +F+ +P  + +    IDY++  K A
Sbjct:    5 LQKTDKAVFDAVEKELGRQRTKLELIASENFTSLSVMEAQGSILTNKYAEGYPGKRYYGGCEFVDMVETLAIERAKQIFGAE----HANVQPHSGAQANMAAYLALINPGDTVLGLNLSHGGHLTHGH-----PMNFSGKYFKIVPMNVRKEDEQIDYEEAAKLA 160          

HSP 2 Score: 30.8018 bits (68), Expect = 7.680e-34
Identity = 10/24 (41.67%), Postives = 22/24 (91.67%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            K+I+AGAS Y+R++D++++R++ +
Sbjct:  166 KVIMAGASNYSRIFDWKKLREIAD 189          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_SYNS9 (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain CC9902) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.598e-34
Identity = 91/242 (37.60%), Postives = 127/242 (52.48%), Query Frame = 2
Query:  209 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFXXNXXXXXXXXMHDCTIMSVFARFATN-KSYNVGRMAHLXWVGCCWCHPFTFENADGVTTTLTNTSWG 931
            + +NA L   DPEI+ +I+ E+ RQ   LELI SENF S +VMQA GSV+TN ++EG P  RYYGG E++D  E+L  +RA + F      W  NVQ  SG+ +NF V+ ALLKP D IM LDL HGGHL+HG       ++    +F  + Y ++ +T  +D + + K A                     + F   A    ++ +  MAH+  +     HP    + D VTTT   T  G
Sbjct:    7 RAINAGLASADPEISRLIDQERHRQETHLELIASENFASQAVMQAQGSVLTNKYAEGLPAKRYYGGCEHVDAIETLAIERAKQLF---DAAW-ANVQPHSGAQANFAVFLALLKPGDTIMGLDLSHGGHLTHG-----SPVNVSGKWFNVVQYGVDPTTQRLDMEAIRKLALEHKPKLIVCGYSAYPRTIDFAAFRSIADEVGAFLLADMAHIAGLVAAGVHPSPVPHCDVVTTTTHKTLRG 239          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_FLAPJ (Serine hydroxymethyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=glyA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.999e-34
Identity = 71/162 (43.83%), Postives = 97/162 (59.88%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAT 724
            D +I D+I  E+ RQ  GLELI SENF S  VM+A GSV+TN ++EGYPG RYYGG E +D+ E +   RA + F  +      NVQ  SGS +N  V+ A LKP D I+  DL HGGHL+HG       ++     +    Y +   TG ++YD++++ AT
Sbjct:    4 DQQIFDLIIEEQDRQIHGLELIASENFVSDQVMEAAGSVLTNKYAEGYPGKRYYGGCEVVDVIEQIAIDRAKDLFGAE----YANVQPHSGSQANTAVFAACLKPGDTILGFDLSHGGHLTHG-----SPVNFSGKLYNPTFYGVEPETGMLNYDKIQEIAT 156          

HSP 2 Score: 35.039 bits (79), Expect = 9.999e-34
Identity = 15/24 (62.50%), Postives = 20/24 (83.33%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCN 807
            KLI+AGASAY+R  D+ER RK+ +
Sbjct:  161 KLIIAGASAYSRDMDFERFRKIAD 184          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_PELTS (Serine hydroxymethyltransferase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=glyA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.000e-33
Identity = 78/165 (47.27%), Postives = 100/165 (60.61%), Query Frame = 2
Query:  215 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQL 709
            L  PL  VDPEI   IE E  RQ   LELI SEN  S +VM+A GSV+TN ++EGYPG RYYGG E++D+AE L   RA E F         NVQ  SG+ +N  VY ALL P D IM +DL HGGHL+HG       ++    +F+   Y + + TG I+Y+++
Sbjct:    3 LKRPLSEVDPEIFRAIELETQRQRNTLELIASENVASRAVMEAQGSVLTNKYAEGYPGRRYYGGCEFVDIAEDLAISRAKELFGAG----FANVQPHSGAQANTAVYFALLNPGDTIMGMDLAHGGHLTHG-----SPVNISGRYFKFTFYGVEKETGRINYEKM 158          

HSP 2 Score: 28.4906 bits (62), Expect = 1.000e-33
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKV 801
            ++IVAGASAY R  D+ +I+++
Sbjct:  168 RMIVAGASAYPRAIDFYKIKEI 189          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_DEHE1 (Serine hydroxymethyltransferase OS=Dehalococcoides ethenogenes (strain 195) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.000e-33
Identity = 72/165 (43.64%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  227 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            L+  DP + + I  E  R  + ++LI SEN+TS +V++A GSV TN ++EGYPG RYY G EY D  E L   RA   F  +      NVQ  SG+ +N   Y A++KP D IM L L HGGHL+HG      K +     +  + Y LN  T  IDYD LEK A
Sbjct:    4 LKTSDPAVYNAIMQETTRLKETIDLIASENYTSKAVLEAQGSVFTNKYAEGYPGKRYYAGCEYADAIEELAIDRAKTLFHAE----HANVQPHSGAQANMAAYFAMVKPGDTIMGLTLSHGGHLTHG-----SKANFTGKLYHVIEYGLNAETERIDYDNLEKLA 159          

HSP 2 Score: 37.3502 bits (85), Expect = 1.000e-33
Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  736 KLIVAGASAYARLYDYERIRKVCNK 810
            +LIV GASAY R+ D+ER R +C+K
Sbjct:  165 RLIVTGASAYPRILDFERFRAICDK 189          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_SHISS (Serine hydroxymethyltransferase OS=Shigella sonnei (strain Ss046) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.123e-33
Identity = 78/161 (48.45%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG+IDY  LEK A
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQA 162          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_SHIFL (Serine hydroxymethyltransferase OS=Shigella flexneri GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.123e-33
Identity = 78/161 (48.45%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG+IDY  LEK A
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQA 162          
BLAST of EY659990 vs. ExPASy Swiss-Prot
Match: GLYA_SHIF8 (Serine hydroxymethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glyA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.123e-33
Identity = 78/161 (48.45%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  239 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNNHSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGVNVQSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSA 721
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TN ++EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF VYTALL+P D ++ ++L HGGHL+HG       ++     +  +PY + ++TG+IDY  LEK A
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHG-----SPVNFSGKLYNIVPYGI-DATGHIDYADLEKQA 162          
The following BLAST results are available for this feature:
BLAST of EY659990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_GEOBB6.583e-3438.14Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_ALHEH7.678e-3445.96Serine hydroxymethyltransferase OS=Alkalilimnicola... [more]
GLYA_ELUMP7.680e-3442.42Serine hydroxymethyltransferase OS=Elusimicrobium ... [more]
GLYA_SYNS98.598e-3437.60Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_FLAPJ9.999e-3443.83Serine hydroxymethyltransferase OS=Flavobacterium ... [more]
GLYA_PELTS1.000e-3347.27Serine hydroxymethyltransferase OS=Pelotomaculum t... [more]
GLYA_DEHE11.000e-3343.64Serine hydroxymethyltransferase OS=Dehalococcoides... [more]
GLYA_SHISS1.123e-3348.45Serine hydroxymethyltransferase OS=Shigella sonnei... [more]
GLYA_SHIFL1.123e-3348.45Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIF81.123e-3348.45Serine hydroxymethyltransferase OS=Shigella flexne... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659990 ID=EY659990; Name=EY659990; organism=Citrus sinensis; type=EST; length=932bp
ATGGACGCCTGAGGACCGGTCCGGAATTCTTCAACACCGGGCGCGTNCGG
NGAGAACTAACATAGAAAGGGCTCTGGNTCTTCGCAGGCTCTCATCTTCC
CTCGACAAACCCTCTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACAT
GTCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCA
CTTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATT
GCTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACT
CATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGT
CTGTCATGACCAACAACCACAGTGAAGGATATCCAGGTGCAAGATATTAT
GGAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCAGAAGCGAGC
TCTGGAAGCATTTCGGTTGGATCCTGAAAAATGGGGAGTGAATGTGCAGT
CTCTGTCTGGATCTCCATCTAATTTTCAAGTCTACACTGCATTGTTAAAA
CCTCATGATAGGATCATGGCACTTGATCTTCCTCATGGTGGGCATCTCTC
ACACGGCTATCAGACAGATACCAAAAAGATATCTGCAGTGTCCATATTTT
TTGAGACAATGCCATACAGATTGAATGAGAGCACTGGCTATATAGACTAT
GACCAGTTGGAGAAAAGTGCCACCCTCTTCANGNCAAATTGATTGTTGCT
GGTGCTAGTGCTTATGCACGATTGTACGATTATGAGCGTATTCGCAAGGT
TTGCAACAAACAAAAGCTATAATGTTGGCAGAATGGCACACCTTAANTGG
GTTGGGTGCTGCTGGTGCCATCCCTTCACTTTTGAGAATGCAGATGGTGT
GACCACAACACTCACAAACACTTCCTGGGGCA
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