EY659989

Overview
NameEY659989
Unique NameEY659989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 53/200 (26.50%), Postives = 95/200 (47.50%), Query Frame = 3
Query:  126 VLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL---------NTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD 689
            +L+TG AGF+GSH ++ L K+     ++ LD  +  Y  ++      L + +  F  +G++ D+ LL  +F+      V+HLAA   V  + +    +  +NI G   LLE CK+   +   ++ S+  VYG          N  +  S + ++   P + Y+A+K   E +  +Y   + L +   R   +YGP   P+
Sbjct:   12 ILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKLD--YCSNINNLGCVLKELNFKFY-KGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCKNYKLK-KFIYVSTDEVYGSGLIEDNDDNNNSINQSSNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLPVIITRANNIYGPKQYPE 207          
BLAST of EY659989 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.491e-11
Identity = 59/208 (28.37%), Postives = 99/208 (47.60%), Query Frame = 3
Query:   90 HSATP-----RSPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ-PASLYAATKKAGEEIAHTYNHI--YGLALTGLRFFTVYG--PWGR 683
            H  TP       P    VLVTG AG++GSH +L L K    V  +DN +     ++K  +    +  ++  +  DL D   + ++F    F  V+H AA A V  +   P  Y  +  +  + +LE   + N + +++++S+ + YG   ++P +E   T Q P + Y   KK  E+I   ++      +A+  LR+F V G  P GR
Sbjct:   58 HRRTPSVFSIHEPGVTHVLVTGGAGYIGSHAALRLLKDSFRVTIVDNLSRGNMGAIKVLQNLFSEPGRLQFIYADLGDPKAVNRIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVLEAMAAHNVR-TLIYSSTCATYGEPEKMPITEG--TPQFPINPYGKAKKMAEDIILDFSKSKKADMAVMILRYFNVIGSDPEGR 262          
The following BLAST results are available for this feature:
BLAST of EY659989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TGDS_DICDI5.491e-1126.50dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium di... [more]
ARAE1_ORYSJ5.491e-1128.37Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659989 ID=EY659989; Name=EY659989; organism=Citrus sinensis; type=EST; length=878bp
TGCAGGACCGGTCCGGAATTTTTCGGACGGCGACGCGTNCGCTCCTCTTT
TCTTACAATGGCGGGGNAGAGTGGGAGAAGCAGGTCCGCCACTCTGCCAC
CCCTCGCTCACCCAACGGGATGACCGTTTTGGTCACCGGAGCTGCCGGTT
TCGTCGGATCTCACTGCTCCCTCGCTCTCAAAAAGCGAGGCGATGGCGTT
TTGGGGTTGGATAATTTCAACAGCTATTACGATCCGTCGCTTAAACGGGC
GAGGCAAAAGCTGCTTCAAAAGCATCAAGTCTTCATCGTCGAAGGGGACC
TGAATGACGCTCCCCTGTTAACAAAGCTTTTCGACGTTGTACCTTTCACC
CACGTACTGCACTTAGCAGCACAGGCCGGGGTTCGCTACGCCATGCAGAA
TCCGCAATCTTACGTGGCATCCAACATCGCTGGATTCGTCAACCTGCTCG
AAGTTTGCAAATCGGTGAACCCTCAGCCGTCGATCGTGTGGGCCTCATCG
AGCTCGGTGTACGGCCTCAACACCCAGGTCCCCTTCTCCGAGTCGCACAG
AACCGACCAGCCCGCGAGTTTGTACGCGGCGACTAAGAAAGCCGGGGAGG
AAATCGCCCACACTTACAACCATATTTACGGTCTTGCCCTCACGGGCCTA
AGGTTCTTCACCGTGTACGGCCCCTGGGGGAGACCCGACATGGCTTACTT
CTTCTTCACCAAGATATCTTACAGGGCAAACCATTGATGTGTACAAGACG
CAAGATGACAGGGAGGTGGCGCGTGACTCCCATACATANATGACGAANNG
AAGGGCTGTGCTCGGGCGTTGGACACGGGGGGAAAAACACCGGGGAGCCG
GGGGAAAAAACGGGGCCCCCGCTCGCTG
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