EY659968

Overview
NameEY659968
Unique NameEY659968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12042 contig Csv1_Contig12042:1211..2082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659968 vs. ExPASy Swiss-Prot
Match: FXL20_BOVIN (F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = 1 
Query:   13 GKLCPQLQNVDLSGFQAVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCA-VTDSAIASLAHGNYLNLQILSLSGCSMVSD---KSLGALRKLGQTLLGLNLQHCNAISTNSVDML 486
            G  CP+L  ++L     +TD G + +   C   L  +  SGC N+TD +++ + + +   L +L +  C +++D     +A NC  L  +D+ +C  +TDS +  L+  +   LQ+LSLS C +++D   + LG        L  + L +C  I+  S++ L
Sbjct:  217 GAHCPELVTLNLQTCLQITDEGLITICRGCHK-LQSLCASGCSNITDAILNALGQ-NCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSI-HCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHL 375
The following BLAST results are available for this feature:
BLAST of EY659968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FXL20_BOVIN9.260e-1128.40F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-A11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659968 ID=EY659968; Name=EY659968; organism=Citrus sinensis; type=EST; length=872bp
TTGCTTAAAAGGGGGAAATTGTGCCCTCAGTTGCAGAATGTTGATTTGAG
TGGGTTTCAGGCTGTAACAGATGCTGGGTTTTTACCAGTGCTTGAGAGTT
GTGAGGCTGGTCTTGCAAAGGTTAATCTTAGTGGTTGTGTGAATTTGACT
GACAAAGTTGTTTCAACGATGGCTGAATTGCATGGTTGGACTCTAGAAAT
GTTGAATCTCGATGGTTGTAGGAAGATCAGTGATGCAAGCTTGATGGCAA
TTGCAGACAACTGCCCTTTGCTGTGTGATCTCGATGTCTCTAAGTGTGCT
GTCACTGATTCTGCTATTGCATCCCTAGCTCATGGAAACTATCTCAATCT
GCAGATTCTTTCGCTGTCAGGTTGCTCAATGGTTTCAGACAAGAGTTTGG
GTGCCCTAAGAAAGTTGGGTCAGACCCTTCTGGGTTTGAACCTCCAGCAC
TGCAATGCAATCAGCACCAACTCTGTTGACATGCTTGTGGAGCAGTTATG
GAGGTGTGATGTCCTCTCATAAGCTGCAAAGCATTCGACAAAACCCCATT
CGATAATATGTAGCACTGATACAAAGGATGGGGATGAACATATCANGAAG
TCTCAGAATTTTCTAGTCAGCATCTGTGAGTAGCAGCAGCAGTTTGTTTA
GTTTTTGGGTCCATCTGCTATGGGTCTTCAGTCTTCAAGTGCTCGGTTTC
TTTTTTCAGGGTGAATATGGCCTCTACCTTTTTTGCANGTTTCCGAATGA
AAGAAATCTGTTACAGCTTTTTGATGCCCATTACGGGTGTCACTTTAAGG
CATATTTTCCTGAGATACAGCTACTGGGGTATGGTTCTAGGGTATCCCTC
CGCTGTATATGGTTTGTGCTAC
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