EY659962

Overview
NameEY659962
Unique NameEY659962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7378 contig Csv1_Contig7378:1..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.504e-83
Identity = 154/228 (67.54%), Postives = 179/228 (78.51%), Query Frame = 1
Query:  160 GGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG  EGYR+ GGPLGE  D +YP G+FDPLGLADDPEAFAEL+  E  +     + + G+F+++      +     L+D  A+P  N  W
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPIENLSDHIADPVANNAW 227          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.194e-72
Identity = 153/241 (63.49%), Postives = 172/241 (71.37%), Query Frame = 1
Query:  112 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNN 828
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGA EGYRIA GPLGEVTDPLYP GSFD LGLA+D EAFAEL+  E  +     + + G+F+++      +DR   LAD      NN
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDR--RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQA--IVSRKDRLENLADHLGWTVNN 255          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.830e-72
Identity = 130/182 (71.43%), Postives = 149/182 (81.87%), Query Frame = 1
Query:  178 RKTGSKSV---SSGSPWYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711
            +KT +K+    SSG  +YG +R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG  EGYR+ GGP GE  DPLYP  SFDPLGLADDP+ FAEL+  E
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKE 201          

HSP 2 Score: 28.1054 bits (61), Expect = 1.830e-72
Identity = 17/46 (36.96%), Postives = 19/46 (41.30%), Query Frame = 2
Query:  722 RXAMXSMVGFFXQAIGTRQGTVRGLWPTLGPSLATTCLGLPHNFXP 859
            R A  SM GFF QAI T +G V+ L   L              F P
Sbjct:  206 RLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.490e-70
Identity = 137/212 (64.62%), Postives = 159/212 (75.00%), Query Frame = 1
Query:  202 SSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNN 828
            S+G  WYG DR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG  EGYR+ GGP GE  DPLYP  SFDPLGLADDP+ FAEL+  E  +     +   G+F+++      +   + LAD  A+PG N
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQA--IVTGKGPIQNLADHLADPGTN 243          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 4.409e-68
Identity = 131/213 (61.50%), Postives = 155/213 (72.77%), Query Frame = 1
Query:   82 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGP-LGEVTDPLYPXGS-FDPLGLADDPEAFAELRFXE 711
            ++T+  ++ F+G+  N  P  + ++ G         ++   S   WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG  EG+RI G P +GE  D LYP G  FDPLGLADDP  FAEL+  E
Sbjct:   10 STTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKVKE 213          

HSP 2 Score: 31.5722 bits (70), Expect = 4.409e-68
Identity = 19/47 (40.43%), Postives = 22/47 (46.81%), Query Frame = 2
Query:  722 RXAMXSMVGFFXQAIGTRQGTVRGLWPTLGPSLATTCLGLPHNFXPG 862
            R AM SM GFF QAI T +G +  L   L   +A         F PG
Sbjct:  218 RLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 5.749e-68
Identity = 133/214 (62.15%), Postives = 153/214 (71.50%), Query Frame = 1
Query:   82 TSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAG-GPLGEVTDPLYPXGS-FDPLGLADDPEAFAELRFXE 711
            T   A S + V K   L+  G   S      +    +  ++ G+  WYG DRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG  EG+RI G   +GE  D LYP G  FDPLGLADDP  FAEL+  E
Sbjct:    4 TIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKVKE 216          

HSP 2 Score: 33.4982 bits (75), Expect = 5.749e-68
Identity = 19/47 (40.43%), Postives = 23/47 (48.94%), Query Frame = 2
Query:  722 RXAMXSMVGFFXQAIGTRQGTVRGLWPTLGPSLATTCLGLPHNFXPG 862
            R AM SM GFF QAI T +G +  L+  L   +A         F PG
Sbjct:  221 RLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 8.857e-63
Identity = 116/169 (68.64%), Postives = 135/169 (79.88%), Query Frame = 1
Query:  217 WYGLDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLG--EVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711
            +YG DR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYP G FDPLGLADDP+ FAEL+  E
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKE 201          

HSP 2 Score: 31.187 bits (69), Expect = 8.857e-63
Identity = 18/47 (38.30%), Postives = 21/47 (44.68%), Query Frame = 2
Query:  722 RXAMXSMVGFFXQAIGTRQGTVRGLWPTLGPSLATTCLGLPHNFXPG 862
            R AM S +GFF QAI T +G V+ L   L              F PG
Sbjct:  206 RLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.535e-59
Identity = 115/179 (64.25%), Postives = 133/179 (74.30%), Query Frame = 1
Query:  181 KTGSKSVSSGSPWYGLDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711
            K  SKS SS + +YG D          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG  EGYR+ GGP GE  DPLYP  +FDPLGLADDP+ FAEL+  E
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKE 222          

HSP 2 Score: 30.0314 bits (66), Expect = 2.535e-59
Identity = 12/33 (36.36%), Postives = 18/33 (54.55%), Query Frame = 3
Query:  765 LAPGKGPLEDFGRHLGRAWQQHALAYPTTLXPE 863
            +  GKGP+E+   HL    + +A AY T   P+
Sbjct:  241 IVTGKGPIENLTDHLANPAENNAFAYATKFTPQ 273          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.093e-47
Identity = 82/98 (83.67%), Postives = 87/98 (88.78%), Query Frame = 1
Query:  418 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG  EGYR+ GGPLGE  DPLYP  +FDPLGLADDPEA AEL+  E
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKE 98          

HSP 2 Score: 40.0466 bits (92), Expect = 1.093e-47
Identity = 21/48 (43.75%), Postives = 25/48 (52.08%), Query Frame = 2
Query:  722 RXAMXSMVGFFXQAIGTRQGTVRGLWPTLGPSLATTCLGLPHNFXPGK 865
            R AM SM GFF QAI T +G +  L+  L   +A        NF PGK
Sbjct:  103 RLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.075e-31
Identity = 86/182 (47.25%), Postives = 102/182 (56.04%), Query Frame = 1
Query:  190 SKSVSSGSP----WYGLDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711
            SK+VS  S     WYG DR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI  G   +  D L+P G FDPLGLA DPE  A L+  E
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKE 225          
The following BLAST results are available for this feature:
BLAST of EY659962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB25_SOLLC1.504e-8367.54Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2_MALDO1.194e-7263.49Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_CHLRE1.830e-7271.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO2.490e-7064.62Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC4.409e-6861.50Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU5.749e-6862.15Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE8.857e-6368.64Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA2.535e-5964.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.093e-4783.67Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH5.075e-3147.25Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659962 ID=EY659962; Name=EY659962; organism=Citrus sinensis; type=EST; length=911bp
ACGAGGCGTNCGGNTTCTCTTTTCCCAAAAATAGTCTTGNTTACCCAGCT
TCTGCTTCTCAATTAAATTCCTCAATGTGTAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACTTGGGCC
CATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGNTGAGGGTTACAGAATT
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGNTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
GGTTTANGGAATCAGAATGGAAGGGNTGCTATGNTCTCCATGGTTGGTTT
CTTCGNTCAGGCCATTGGCACCCGGCAAGGGACCGTTAGAGGACTTTGGC
CGACACTTGGGCCGAGCCTGGCAACAACATGCCTTGGCCTACCCCACAAC
TTTGNTCCCGGAAAAGGAGCTCCGGTGGATAAACTTATAGCGGGGAATTG
GAATTGAAAGG
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