EY659962

Overview
NameEY659962
Unique NameEY659962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7378 contig Csv1_Contig7378:1..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28
Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837
            SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+  E  +     + + G+F+++      +     LAD  A+P NN  W
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHLADPVNNNAW 106          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28
Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837
            SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+  E  +     + + G+F+++      +     LAD  A+P NN  W
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHLADPVNNNAW 255          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28
Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837
            SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+  E  +     + + G+F+++      +     LAD  A+P NN  W
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHLADPVNNNAW 255          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.170e-27
Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837
            SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+  E  +     + + G+F+++      +     LAD  A+P NN  W
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHIADPVNNNAW 257          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.170e-27
Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837
            SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+  E  +     + + G+F+++      +     LAD  A+P NN  W
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHIADPVNNNAW 257          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.430e-25
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 1
Query:  499 LDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAG-GPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837
            LDYLGNPSL+HAQSILAIWA QV+LMGA EGYR+AG GPLGE  D LYP GSFDPL    DPEAFAEL+  E  +     + + G+F+++      +     LAD  A+P NN  W
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHLADPVNNNAW 114          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.183e-20
Identity = 70/206 (33.98%), Postives = 94/206 (45.63%), Query Frame = 1
Query:  100 SSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711
            S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YP G+FDPLG + DP  F EL+  E
Sbjct:    9 SCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKE 191          

HSP 2 Score: 25.7942 bits (55), Expect = 2.183e-20
Identity = 9/20 (45.00%), Postives = 11/20 (55.00%), Query Frame = 3
Query:  771 PGKGPLEDFGRHLGRAWQQH 830
            PG GPLE+   HL   W  +
Sbjct:  213 PGTGPLENLATHLADPWHNN 232          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.171e-17
Identity = 58/165 (35.15%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  265 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAG--GPLGEVTDPLYPXGS-------------FDPLGL-ADDPEAFAELRFXE 711
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++P                FDPLG  +  P    ELR  E
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.440e-17
Identity = 57/153 (37.25%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  259 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +   E  R       +     YP G+FDPLG + DP  F EL+  E
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKE 192          

HSP 2 Score: 23.0978 bits (48), Expect = 4.440e-17
Identity = 8/19 (42.11%), Postives = 10/19 (52.63%), Query Frame = 3
Query:  774 GKGPLEDFGRHLGRAWQQH 830
            G GPLE+   HL   W  +
Sbjct:  215 GTGPLENLATHLADPWHNN 233          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.244e-16
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:  520 SLIHAQSILAIWACQVVLMGAXEGYRI---AGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711
            +LIHA+S+LAI A QV+LMGA EGYR    A G  GE  D LYP G FDPLGLADDP+ F EL+  E
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70          

HSP 2 Score: 27.7202 bits (60), Expect = 2.244e-16
Identity = 18/47 (38.30%), Postives = 22/47 (46.81%), Query Frame = 2
Query:  722 RXAMXSMVGFFXQAIGTRQGTVRG-LWPTLGPSLATTCLGLPHNFXP 859
            R AM  M+GF+ QAI T +G V   L+    PS       L   F P
Sbjct:   75 RLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
The following BLAST results are available for this feature:
BLAST of EY659962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2D_SOLLC8.959e-2861.11Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.959e-2861.11Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC8.959e-2861.11Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC1.170e-2761.11Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.170e-2761.11Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA1.430e-2556.03Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU2.183e-2033.98Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC4.171e-1735.15Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB11_SOLLC4.440e-1737.25Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_EUGGR2.244e-1662.69Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659962 ID=EY659962; Name=EY659962; organism=Citrus sinensis; type=EST; length=911bp
ACGAGGCGTNCGGNTTCTCTTTTCCCAAAAATAGTCTTGNTTACCCAGCT
TCTGCTTCTCAATTAAATTCCTCAATGTGTAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACTTGGGCC
CATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGNTGAGGGTTACAGAATT
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGNTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
GGTTTANGGAATCAGAATGGAAGGGNTGCTATGNTCTCCATGGTTGGTTT
CTTCGNTCAGGCCATTGGCACCCGGCAAGGGACCGTTAGAGGACTTTGGC
CGACACTTGGGCCGAGCCTGGCAACAACATGCCTTGGCCTACCCCACAAC
TTTGNTCCCGGAAAAGGAGCTCCGGTGGATAAACTTATAGCGGGGAATTG
GAATTGAAAGG
back to top