EY659962
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28 Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1 Query: 520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837 SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+ E + + + G+F+++ + LAD A+P NN W Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHLADPVNNNAW 106
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28 Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1 Query: 520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837 SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+ E + + + G+F+++ + LAD A+P NN W Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHLADPVNNNAW 255
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28 Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1 Query: 520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837 SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+ E + + + G+F+++ + LAD A+P NN W Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHLADPVNNNAW 255
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.170e-27 Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1 Query: 520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837 SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+ E + + + G+F+++ + LAD A+P NN W Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHIADPVNNNAW 257
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.170e-27 Identity = 66/108 (61.11%), Postives = 78/108 (72.22%), Query Frame = 1 Query: 520 SLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837 SL+HAQSILAIWACQVVLMGA EGYRIAGGPLGEV DPLYP GSFDPLGLA+DPEAFAEL+ E + + + G+F+++ + LAD A+P NN W Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHIADPVNNNAW 257
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.430e-25 Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 1 Query: 499 LDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAG-GPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE--SEWKGCYXLHGWFLRSGHWHPARDR*RTLADTWAEPGNNMPW 837 LDYLGNPSL+HAQSILAIWA QV+LMGA EGYR+AG GPLGE D LYP GSFDPL DPEAFAEL+ E + + + G+F+++ + LAD A+P NN W Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQA--IVTGKGPLENLADHLADPVNNNAW 114
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.183e-20 Identity = 70/206 (33.98%), Postives = 94/206 (45.63%), Query Frame = 1 Query: 100 SSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGLDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711 S S VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP + ++ I A + + + E R + YP G+FDPLG + DP F EL+ E Sbjct: 9 SCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKE 191 HSP 2 Score: 25.7942 bits (55), Expect = 2.183e-20 Identity = 9/20 (45.00%), Postives = 11/20 (55.00%), Query Frame = 3 Query: 771 PGKGPLEDFGRHLGRAWQQH 830 PG GPLE+ HL W + Sbjct: 213 PGTGPLENLATHLADPWHNN 232
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 4.171e-17 Identity = 58/165 (35.15%), Postives = 82/165 (49.70%), Query Frame = 1 Query: 265 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAG--GPLGEVTDPLYPXGS-------------FDPLGL-ADDPEAFAELRFXE 711 PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q +Y + + ++ ++VL+G EG R A P TDP++P FDPLG + P ELR E Sbjct: 74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 4.440e-17 Identity = 57/153 (37.25%), Postives = 75/153 (49.02%), Query Frame = 1 Query: 259 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P + ++ I A + + + E R + YP G+FDPLG + DP F EL+ E Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKE 192 HSP 2 Score: 23.0978 bits (48), Expect = 4.440e-17 Identity = 8/19 (42.11%), Postives = 10/19 (52.63%), Query Frame = 3 Query: 774 GKGPLEDFGRHLGRAWQQH 830 G GPLE+ HL W + Sbjct: 215 GTGPLENLATHLADPWHNN 233
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.244e-16 Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1 Query: 520 SLIHAQSILAIWACQVVLMGAXEGYRI---AGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELRFXE 711 +LIHA+S+LAI A QV+LMGA EGYR A G GE D LYP G FDPLGLADDP+ F EL+ E Sbjct: 4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKE 70 HSP 2 Score: 27.7202 bits (60), Expect = 2.244e-16 Identity = 18/47 (38.30%), Postives = 22/47 (46.81%), Query Frame = 2 Query: 722 RXAMXSMVGFFXQAIGTRQGTVRG-LWPTLGPSLATTCLGLPHNFXP 859 R AM M+GF+ QAI T +G V L+ PS L F P Sbjct: 75 RLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121 The following BLAST results are available for this feature:
BLAST of EY659962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >EY659962 ID=EY659962; Name=EY659962; organism=Citrus sinensis; type=EST; length=911bpback to top |