EY659962

Overview
NameEY659962
Unique NameEY659962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7378 contig Csv1_Contig7378:1..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.023e-16
Identity = 76/239 (31.80%), Postives = 106/239 (44.35%), Query Frame = 1
Query:   76 CVTSTMAL------SSSFVGKAVNLAPSGNELSNGGRISMRK----TGSKSVSSGSPWYGLDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAG--GPLGEVTDPLYPXGS-------------FDPLGL-ADDPEAFAELRFXE 711
            C +ST+A       SS   G  V    +      G R+ + K     GS+SV+  +     DR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q       +Y  + +         ++  ++VL+G  EG R A    P    TDP++P                FDPLG  +  P    ELR  E
Sbjct:    5 CASSTIAAVAFSSPSSQKNGSIVGATKAS--FLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKE 222          
BLAST of EY659962 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 61/161 (37.89%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  265 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGGPL---GEVTDPLYPXGSFDPLGLADDPEAFAELRFXESEWKGCYXL 738
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV     E +R  GG L    E  D  YP   FDPL L  +    AE++       G + L
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYP--GFDPLNLTTEYTKEAEIKNGRLAMNGMFGL 513          

HSP 2 Score: 76.6406 bits (187), Expect = 2.142e-13
Identity = 53/152 (34.87%), Postives = 73/152 (48.03%), Query Frame = 1
Query:  256 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEGYRIAGG---PLGEVTDPLYPXGSFDPLGLADDPEAFAELR 702
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YP   FDPL L  D    AE++
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYP--GFDPLNLTTDYTRAAEVK 316          

HSP 3 Score: 67.781 bits (164), Expect = 9.951e-11
Identity = 48/146 (32.88%), Postives = 69/146 (47.26%), Query Frame = 1
Query:  268 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAXEG-YRIAGGPLGEVTDPLYPXGSFDPLGLADDPEAFAELR 702
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP      FDPL L  D    AE++
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPGFDPLNLTTDYTKEAEIK 128          
The following BLAST results are available for this feature:
BLAST of EY659962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB12_PETHY6.023e-1631.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
LH18_EUGGR4.317e-1437.89Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-017-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659962 ID=EY659962; Name=EY659962; organism=Citrus sinensis; type=EST; length=911bp
ACGAGGCGTNCGGNTTCTCTTTTCCCAAAAATAGTCTTGNTTACCCAGCT
TCTGCTTCTCAATTAAATTCCTCAATGTGTAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCTAGACAGAGTCAAGTACTTGGGCC
CATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCCGTATGGTTCAAGGCGGGGGCCCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGGAACCCAAGCCTGATCCACGCCCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGNTGAGGGTTACAGAATT
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGNTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
GGTTTANGGAATCAGAATGGAAGGGNTGCTATGNTCTCCATGGTTGGTTT
CTTCGNTCAGGCCATTGGCACCCGGCAAGGGACCGTTAGAGGACTTTGGC
CGACACTTGGGCCGAGCCTGGCAACAACATGCCTTGGCCTACCCCACAAC
TTTGNTCCCGGAAAAGGAGCTCCGGTGGATAAACTTATAGCGGGGAATTG
GAATTGAAAGG
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