EY659951

Overview
NameEY659951
Unique NameEY659951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659951 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 40/116 (34.48%), Postives = 68/116 (58.62%), Query Frame = 1 
Query:   73 KRVLXDLCEFVKPVVFMDNSYIVPEGGSIDKMVFVVQGNLLTYNSEGITAAPPNTDNYDC-----NICGEELVAWAQDACTRTDSSSSALPISTITIQALTKVEAFILMADDLKNV 405
            +R+L  +CE +KP +  + +++V EG  +++M+F+++G+L +Y + G      N+    C     + CGEEL+ WA D           LP ST T++A+ +VEAF L A+DL+ V
Sbjct:  477 ERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNS----CLIGPGDFCGEELLTWALD-----PRPVVILPSSTRTVKAICEVEAFALKAEDLQFV 583
The following BLAST results are available for this feature:
BLAST of EY659951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CNG15_ARATH7.642e-1134.48Putative cyclic nucleotide-gated ion channel 15 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659951 ID=EY659951; Name=EY659951; organism=Citrus sinensis; type=EST; length=775bp
TTNNNNNNNNTATGGTAGCCTGCAGTACGGTCCGGAATTTTTCATATGGG
GGNGNNNGGNTTGGTTTCCTAAAAAAGGGTATTGGANGATCTGTGTGAAT
TTGTAAAACCAGTTGTCTTTATGGACAACTCTTATATTGTCCCCGAGGGA
GGCTCAATTGATAAGATGGTCTTCGTGGTGCAAGGCAACCTACTGACTTA
CAACTCCGAGGGCATAACAGCTGCCCCTCCAAACACTGATAATTATGATT
GCAACATTTGTGGGGAAGAACTTGTTGCTTGGGCTCAGGACGCTTGCACT
AGAACTGACTCTTCTTCATCTGCCCTCCCCATCTCAACCATCACTATTCA
AGCTCTCACAAAAGTTGAAGCATTTATTCTTATGGCTGATGACTTGAAAA
ATGTATTACTCATCAAGCACAATCGGGCAGCTCCATTTATTCAAGCAGCT
CGATTCATTACAATAGTCATGGGTGCTATAAAAGGAACTTTCTTGCCTTC
CACAAGGACTGCAGAAACATCAACACAGGAGCAAGTACCTCCAACAATAA
GGTCTAAGCAGCTGGTGGAAACTCAGATTATTGCAAAAGAGAAATAGGCG
GCTCACTCTTTTTTTGGGTCGCATGATGAGCTCACAGCTATTGTTTATCT
TTTAATTGCAAATTACATCTTGTTTCCAGGTTATTGCATAAATCTCCTAA
AAGTAATTTGTATACTGTACATTTATTTGGAAATTTAGAGAACTACTGAC
GGCTTAAAAAAAAAAAAAAAAAAAA
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