EY659903

Overview
NameEY659903
Unique NameEY659903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.225e-34
Identity = 69/120 (57.50%), Postives = 80/120 (66.67%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF--TPXXXXXXXXXXXXXXXXXKSSSMAGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYTHW+ YAIGGSA PTINSQGNR+ AP   + KEVTK  D   SQW+ WNWRSEGDL+LNGAYF  T                  + SS+ GSIT+ AG + C+K  +C
Sbjct:  285 RHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNEKYRKEVTKHEDAPESQWRSWNWRSEGDLMLNGAYFRQTGAGASSSSTYARASSLSARPSSLVGSITTNAGPVNCKKGSRC 404          
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL_ZINEL (Pectate lyase OS=Zinnia elegans PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.957e-34
Identity = 67/118 (56.78%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMAGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYTHW+ YAIGGSA+PTI SQGNR+ AP   F KEVTK  +   S+WK WNWRSEGDL+LNGAYF                   + S++  S+T  AGAL CRK  +C
Sbjct:  284 RHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFDKEVTKHENAPESEWKNWNWRSEGDLMLNGAYFRESGGRAASSFARASSLSGRPSTLVASMTRSAGALVCRKGSRC 401          
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.196e-33
Identity = 67/120 (55.83%), Postives = 80/120 (66.67%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFT--PXXXXXXXXXXXXXXXXXKSSSMAGSITSGAGALTCRKSRQC 397
            RHGYFHVVNNDYTHW+ YAIGGSANPTINSQGNR+ AP ++ +KEVTK  D    +W+ WNWRSEGDLLLNGA+FT                    + SS  G IT  +GAL+C++   C
Sbjct:  313 RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGAFFTYSGAGPAKSSSYSKASSLAARPSSHVGEITIASGALSCKRGSHC 432          
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.763e-31
Identity = 64/110 (58.18%), Postives = 72/110 (65.45%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMAGSITSGAGAL 373
            R GY HVVNND+T W+ YAIGGS NPTINSQGNRY AP N FAKEVTKRV+T    WKGWNWRSEGD+L+NGA+F                   KS+S    IT  +G L
Sbjct:  305 RRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGDWKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVL 414          
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.708e-26
Identity = 57/109 (52.29%), Postives = 69/109 (63.30%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTA-ASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMAGSITSGAG 367
            R GY HVVNND+T W  YAIGGS NPTINSQGNRY+AP +  AKEVTKRVD+    +W  WNWR+EGDL+ NGA+F                   K++S+   +T  AG
Sbjct:  302 RRGYIHVVNNDFTEWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLMENGAFFVASGEGMSSMYSKASSVDPKAASLVDQLTRNAG 410          
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.446e-25
Identity = 58/124 (46.77%), Postives = 69/124 (55.65%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF------TPXXXXXXXXXXXXXXXXXKSSSMAGSITSGAGALTCRKSRQC 397
            R+G  HVVNNDYTHW+ YAIGG+ NPTI SQGNR+ AP N  AK++TKR  T   +WK WNW+SEGD  LNGAYF                         K  +M   +T  AG L C+    C
Sbjct:  336 RYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPPNEEAKQITKREYTPYGEWKSWNWQSEGDYFLNGAYFVQSGKANAWSSKPKTPLPNKFTIRPKPGTMVRKLTMDAGVLGCKLGEAC 459          
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.726e-24
Identity = 55/119 (46.22%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDT-AASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMAGSITSGAGALTCRKSRQC 397
            RHGYFH+VNN Y  W  YAIGGSANPTI SQGN + A  N F KEVTKR       +WK WNW+SEGD ++NGA+FTP                 + +S+  +     G L+C   + C
Sbjct:  274 RHGYFHIVNNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGDEMVNGAFFTPSGKEDSPSYAKFSSMVARPASLLKTTHPSVGVLSCEIDQAC 392          
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL_LILLO (Pectate lyase OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.561e-24
Identity = 52/118 (44.07%), Postives = 70/118 (59.32%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMAGSITSGAGALTCRKSRQC 397
            R+G+ HVVNNDYTHW  YA+GGS +PTI SQGNRY AP    AKEVTKR     ++W  W W+S+GDL ++GA+F                   K  +    +T  +GAL C+++ +C
Sbjct:  317 RYGFVHVVNNDYTHWIMYAVGGSQHPTIISQGNRYIAPHIEAAKEVTKRDYAEPAEWSKWTWKSQGDLFVSGAFFVESGGPFENKYSKKDLIKAKPGTFVQRLTRFSGALNCKENMEC 434          
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.937e-23
Identity = 49/76 (64.47%), Postives = 56/76 (73.68%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFT 271
            R GY HVVNNDYTHW+ YAIGGS +PTI  QGNR+ AP + F K+VTKR     S W  W WRSEG+L +NGAYFT
Sbjct:  330 RWGYIHVVNNDYTHWNMYAIGGSMHPTIIHQGNRFIAPPDIFKKQVTKREYNPESVWMQWTWRSEGNLFMNGAYFT 405          
BLAST of EY659903 vs. ExPASy Swiss-Prot
Match: PEL7_ARATH (Probable pectate lyase 7 OS=Arabidopsis thaliana GN=At3g01270 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.142e-23
Identity = 57/120 (47.50%), Postives = 69/120 (57.50%), Query Frame = 2
Query:   44 RHGYFHVVNNDYTHWDTYAIGGSANPTINSQGNRYNAPLN-AFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMAGS-ITSGAGALTCRKSRQC 397
            R G+ HVVNNDYTHW+ YAIGGS  PTI S GNR+ AP +    +EVTKR   + S+WK WNWRSE D+ +N AYF                     + MA S +T  AGAL CR  + C
Sbjct:  356 RWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKQHYREVTKRDYASESEWKNWNWRSEKDVFMNNAYFRQSGNPHFKCSHSRQQMIKPKNGMAVSKLTKYAGALDCRVGKAC 475          
The following BLAST results are available for this feature:
BLAST of EY659903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL18_SOLLC2.225e-3457.50Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL_ZINEL4.957e-3456.78Pectate lyase OS=Zinnia elegans PE=1 SV=1[more]
PEL22_ARATH4.196e-3355.83Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL12_ARATH1.763e-3158.18Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL13_ARATH1.708e-2652.29Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL3_ARATH1.446e-2546.77Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
PEL21_ARATH2.726e-2446.22Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL_LILLO3.561e-2444.07Pectate lyase OS=Lilium longiflorum PE=2 SV=1[more]
PEL59_SOLLC3.937e-2364.47Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL7_ARATH5.142e-2347.50Probable pectate lyase 7 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659903 ID=EY659903; Name=EY659903; organism=Citrus sinensis; type=EST; length=916bp
TTTTCACACAGACGCGTCCGNTCATTCATTGACANAAAAAGGGAGACATG
GTTATTTCCATGTGGTGAACAATGACTACACTCACTGGGACACGTATGCC
ATTGGTGGAAGTGCAAACCCCACCATCAACAGCCAGGGAAACAGATACAA
TGCTCCATTGAATGCCTTCGCAAAGGAGGTAACAAAGAGGGTGGACACAG
CTGCAAGCCAGTGGAAGGGCTGGAACTGGAGATCTGAAGGAGACCTCTTG
CTGAACGGTGCCTACTTTACCCCATCCGGAGCAGGAGCCTCAGCTAGCTA
TGCTCGTGCTTCAAGCTTGGGAGCCAAGTCTTCCTCCATGGCTGGATCCA
TTACTTCTGGTGCTGGTGCTCTTACTTGCCGCAAGAGCCGTCAGTGCTCA
TAGTATTCATCATTAAATTGGCCGAAAAAAGAAATGGCCATCGAATTTCT
GTTTTGTTTTTCATTTTTCTTCTATATAGTATATCACCTATCCAATTTAT
CCACAATCTGGTCATTGTTTCAATCTCTACCGTATATCTGCTTCACATAT
TTTGACAAGTGTACATTATTGCACATGTCATTGTATTGCCTCACCCAGTT
TGTTTATCAGTTACTTGCTCAACCTCGGCCTGCTTCAACTGAAAAAACAA
ACATTTGCATTCCCAGAAGCAGGTGCGGAAGTGTTGTTCATTTTATTTTC
CCTCCTTGGCCTCTTTTTTTCAGCCTCATTCTCATTTCCTTTCTACTAGC
ACTTGCCTATTTTGTGTCAGTGTCAGTCAGCTGTCAACTGTCAATCTTGA
GCCCCCTACTACTCTCTTTTTCATTTTGGCTTTTGGGTTATAGGGTCCGA
ATGATTTTGGCTTTTTTCTCCCGCTCCTTGNTGGGTCTAGNCAATAGCAA
CAGATTTGATGCAAAA
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