EY659900

Overview
NameEY659900
Unique NameEY659900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659900 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 6.997e-36
Identity = 80/223 (35.87%), Postives = 121/223 (54.26%), Query Frame = 2
Query:   17 RIKLFHEDSAGTVTAFYMNSNTEN---ARDELDFEFLGNRTGQPYTVQTNIYANG--KGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPV-----PGPANCASNPGNW-----WEANNYQALTAMEARRYRWVRLNHMIYDYCTX*SRYPVPPPEC 634
            R+KL    ++G V AFY+ SN E    + DE+D E LG      +T+QTN+YANG  +  RE++   WFDP   +H YT++WN HH VF VD++P+R + N G   + +P ++PM +Y T+W+  +WAT+GG   +++  APF     D ++ GC V      G   C  + G+       +  ++  L+  +     W R   M Y YC+   RY V P EC
Sbjct:   89 RLKLPAGFASGVVVAFYL-SNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRYKVMPAEC 309          
BLAST of EY659900 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.107e-32
Identity = 81/209 (38.76%), Postives = 113/209 (54.07%), Query Frame = 2
Query:   14 VRIKLFHEDSAGTVTAFYMNSNTENARDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTX*SRYPVPPPEC 634
            VRIK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW   N + L++ E   Y   R  ++ YDYC+   RYP  P EC
Sbjct:   70 VRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263          
BLAST of EY659900 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 51/159 (32.08%), Postives = 70/159 (44.03%), Query Frame = 2
Query:   41 SAGTVTAF--YMNSNTENARDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWE---ADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGN 502
            + G V++F  Y   +  N  DE+D EFLG  T +   VQ N Y NG G  E   NL FD + D+H Y   W   +I FYVD    +VY+ +   P     P  +   LW     D+W  R        ++  +  YY +   +  P P P    S P N
Sbjct:  115 NVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGK--KVYRGTRNIPV---TPGKIMMNLWPGIGVDEWLGRYDGRTPLQAEYEYVKYYPNGVPQDNPTPTPTIAPSTPTN 265          
The following BLAST results are available for this feature:
BLAST of EY659900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH33_ARATH6.997e-3635.87Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH2.107e-3238.76Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_CLOTH4.567e-1132.08Beta-glucanase OS=Clostridium thermocellum (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659900 ID=EY659900; Name=EY659900; organism=Citrus sinensis; type=EST; length=929bp
TCATAAAAGAGGCGTCCGGATCAAGCTCTTTCATGAAGACTCTGCTGGAA
CTGTCACTGCATTTTATATGAATTCCAACACCGAAAATGCCAGAGACGAG
CTTGATTTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCA
GACCAATATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACC
TCTGGTTTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAAC
CATCACCATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAA
AAACAGTGGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGTATT
CGACGCTGTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAGAAA
ATAGATTGGAGCAAAGCTCCTTTTTATGCTTATTACAGAGACTTTGATAT
TGAGGGCTGCCCAGTTCCTGGACCAGCAAACTGTGCCTCGAACCCAGGTA
ACTGGTGGGAGGCAAATAATTATCAAGCCCTCACCGCCATGGAAGCAAGA
AGATACAGATGGGTTCGTCTCAACCACATGATCTATGATTATTGCACTGA
NTAATCAAGATACCCAGTACCCCCACCGGAATGCCTTGCCGGCATATAAT
TTCACCCNNGCATTATTAAGCAGGTGGACGGTACTCCATATCCGNATCAT
ATCATGTATATTACTTCACGTACACGTCCTTTGNATTATTCCCTATTCGG
GTGAAAAGACTATACGCCTATCAAGGGAGGGGGCAGGAGGGAAATAAACA
TTGTGTGCTTTTAAATGGGATTATGGAAGGGGAAATATGGTGGTATTCTG
CTCCGCTGGACATTTATAAGGCGGAATTGATGCCAGAATTTGGGGCAATA
AAAGCCTCTTATAATTGGGAAAAAAAANN
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