EY659896

Overview
NameEY659896
Unique NameEY659896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_SINMW (GTP cyclohydrolase 1 OS=Sinorhizobium medicae (strain WSM419) GN=folE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 3 
Query:  444 PDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSK 785
            P     E+AV+VLL+  GED  REG+K TP RVAKA RE   GY    +D++ G  F E               +V+ +D+  +S+C+  ++P   K H+ Y+P+G RVLGLSK
Sbjct:   18 PTQKEAEEAVRVLLRWAGEDPAREGLKDTPARVAKAYREIFGGYDLAAEDVL-GRTFEEV---------SGYDDIVLEKDIPFYSHCEHHMVPIIGKAHIAYLPNG-RVLGLSK 120
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_RHIME (GTP cyclohydrolase 1 OS=Rhizobium meliloti GN=folE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 3 
Query:  444 PDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSK 785
            P     E+AV+VLL+  GED  REG+K TP RVAKA RE   GY    +D++ G  F E               +V+ +D+  +S+C+  ++P   K H+ Y+P+G RVLGLSK
Sbjct:   17 PTQKEAEEAVRVLLRWAGEDPAREGLKDTPSRVAKAYREIFGGYDLVAEDVL-GRTFEEV---------SGYDDIVLEKDIPFYSHCEHHMVPIIGKAHIAYLPNG-RVLGLSK 119
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_BRUSU (GTP cyclohydrolase 1 OS=Brucella suis GN=folE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  438 QEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            ++P     E AV+ LL   GED +REG+ +TP RVAKA +E   GY+++ ++++ G  F E               +V+V+D+  FS+C+  ++P   K HV Y+P G RV+GLSK   ++  F
Sbjct:   26 KKPGKAEAEAAVRTLLLWAGEDPDREGLLETPKRVAKAYQELFGGYSESPEEVL-GTTFEEV---------AGYDDMVLVKDISFFSHCEHHMVPIIGKAHVAYLPEG-RVVGLSKIARVVDIF 138
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_BRUME (GTP cyclohydrolase 1 OS=Brucella melitensis GN=folE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  438 QEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            ++P     E AV+ LL   GED +REG+ +TP RVAKA +E   GY+++ ++++ G  F E               +V+V+D+  FS+C+  ++P   K HV Y+P G RV+GLSK   ++  F
Sbjct:   26 KKPGKAEAEAAVRTLLLWAGEDPDREGLLETPKRVAKAYQELFGGYSESPEEVL-GTTFEEV---------AGYDDMVLVKDISFFSHCEHHMVPIIGKAHVAYLPEG-RVVGLSKIARVVDIF 138
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_BRUMB (GTP cyclohydrolase 1 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=folE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  438 QEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            ++P     E AV+ LL   GED +REG+ +TP RVAKA +E   GY+++ ++++ G  F E               +V+V+D+  FS+C+  ++P   K HV Y+P G RV+GLSK   ++  F
Sbjct:   26 KKPGKAEAEAAVRTLLLWAGEDPDREGLLETPKRVAKAYQELFGGYSESPEEVL-GTTFEEV---------AGYDDMVLVKDISFFSHCEHHMVPIIGKAHVAYLPEG-RVVGLSKIARVVDIF 138
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_BRUC2 (GTP cyclohydrolase 1 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=folE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  438 QEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            ++P     E AV+ LL   GED +REG+ +TP RVAKA +E   GY+++ ++++ G  F E               +V+V+D+  FS+C+  ++P   K HV Y+P G RV+GLSK   ++  F
Sbjct:   26 KKPGKAEAEAAVRTLLLWAGEDPDREGLLETPKRVAKAYQELFGGYSESPEEVL-GTTFEEV---------AGYDDMVLVKDISFFSHCEHHMVPIIGKAHVAYLPEG-RVVGLSKIARVVDIF 138
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_BRUAB (GTP cyclohydrolase 1 OS=Brucella abortus GN=folE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  438 QEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            ++P     E AV+ LL   GED +REG+ +TP RVAKA +E   GY+++ ++++ G  F E               +V+V+D+  FS+C+  ++P   K HV Y+P G RV+GLSK   ++  F
Sbjct:   26 KKPGKAEAEAAVRTLLLWAGEDPDREGLLETPKRVAKAYQELFGGYSESPEEVL-GTTFEEV---------AGYDDMVLVKDISFFSHCEHHMVPIIGKAHVAYLPEG-RVVGLSKIARVVDIF 138
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_BRUA2 (GTP cyclohydrolase 1 OS=Brucella abortus (strain 2308) GN=folE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  438 QEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            ++P     E AV+ LL   GED +REG+ +TP RVAKA +E   GY+++ ++++ G  F E               +V+V+D+  FS+C+  ++P   K HV Y+P G RV+GLSK   ++  F
Sbjct:   26 KKPGKAEAEAAVRTLLLWAGEDPDREGLLETPKRVAKAYQELFGGYSESPEEVL-GTTFEEV---------AGYDDMVLVKDISFFSHCEHHMVPIIGKAHVAYLPEG-RVVGLSKIARVVDIF 138
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_BRUA1 (GTP cyclohydrolase 1 OS=Brucella abortus (strain S19) GN=folE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  438 QEPDALAIEDAVKVLLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            ++P     E AV+ LL   GED +REG+ +TP RVAKA +E   GY+++ ++++ G  F E               +V+V+D+  FS+C+  ++P   K HV Y+P G RV+GLSK   ++  F
Sbjct:   26 KKPGKAEAEAAVRTLLLWAGEDPDREGLLETPKRVAKAYQELFGGYSESPEEVL-GTTFEEV---------AGYDDMVLVKDISFFSHCEHHMVPIIGKAHVAYLPEG-RVVGLSKIARVVDIF 138
[Close]
BLAST of EY659896 vs. ExPASy Swiss-Prot
Match: GCH1_PSEA6 (GTP cyclohydrolase 1 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=folE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 3 
Query:  480 LLQGLGEDINREGIKKTPHRVAKALREGTKGYTQNVKDIVEGALFPEAXVDXXXXXXXXXXXLVIVRDLDLFSYCQSCLLPFQVKVHVXYVPSGQRVLGLSKSPELLKSF 809
            +L  LGED  R G+  TP R AKA++  T GY +N+ D+V GA+F EA  D           +V++++++ +S C+  +LPF  + H+ Y+P G +VLGLSK   ++  +
Sbjct:   12 ILSILGEDTQRGGLVDTPKRAAKAMQFLTDGYEKNLNDVVNGAIF-EADTD----------EMVVIQNIEYYSLCEHHILPFIGQCHIAYLPQG-KVLGLSKFARIVDMY 109
The following BLAST results are available for this feature:
BLAST of EY659896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
GCH1_SINMW5.933e-1340.35GTP cyclohydrolase 1 OS=Sinorhizobium medicae (str... [more]
GCH1_RHIME5.933e-1340.35GTP cyclohydrolase 1 OS=Rhizobium meliloti GN=folE... [more]
GCH1_BRUSU5.933e-1336.29GTP cyclohydrolase 1 OS=Brucella suis GN=folE PE=3... [more]
GCH1_BRUME5.933e-1336.29GTP cyclohydrolase 1 OS=Brucella melitensis GN=fol... [more]
GCH1_BRUMB5.933e-1336.29GTP cyclohydrolase 1 OS=Brucella melitensis biotyp... [more]
GCH1_BRUC25.933e-1336.29GTP cyclohydrolase 1 OS=Brucella canis (strain ATC... [more]
GCH1_BRUAB5.933e-1336.29GTP cyclohydrolase 1 OS=Brucella abortus GN=folE P... [more]
GCH1_BRUA25.933e-1336.29GTP cyclohydrolase 1 OS=Brucella abortus (strain 2... [more]
GCH1_BRUA15.933e-1336.29GTP cyclohydrolase 1 OS=Brucella abortus (strain S... [more]
GCH1_PSEA67.749e-1337.27GTP cyclohydrolase 1 OS=Pseudoalteromonas atlantic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-C09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659896 ID=EY659896; Name=EY659896; organism=Citrus sinensis; type=EST; length=885bp
TCAAACAACGCCGCGTCCGAATAATCATTCCCAAAAAACGTATCCTCTTT
CTTTTCCCTTACCCTCTCCCTCTACTGCTTCTGCTCCCTATCTCTTCACA
TCTCTCTTCTTCTCGCTGTTCTTATTGTCTCTGGCTACCTCTTCTTTTCT
TTTTTCCTCTCTCTCCCCTTTTTTTCTTAATTGACAGTTTTACAAAAAAT
TGATTTTTTATTTTTGTGTGTTCCAGAACCAATCTCTTTTCGAGTTTCCA
ATATCAATATCAATATCAATATCAAAGTTGTTTTGTGTGTACTTTTTTGG
GTTTTTGATTGGTTTGTTTATCTGGGTTGTTGTTATTTTGTGTGTCTCTC
AATCAAATGGGCGCTTTGGATGAGGGACATTTCGATTTGGAGCTTGAGAA
TGGAGTGAAACTGAGTAGCCTTGAGCTTGGCTTTGAGCAAGAACCAGACG
CGCTCGCTATTGAGGATGCCGTCAAAGTTCTCTTGCAAGGATTAGGTGAA
GATATTAATAGAGAAGGCATCAAGAAGACTCCTCATCGCGTTGCCAAAGC
TCTTCGTGAAGGAACCAAAGGTTACACACAAAATGTAAAAGACATTGTTG
AAGGTGCTTTGTTCCCTGAAGCANGTGTGGATCATGGAATTGGTCATGCC
GGAGGAGCAGGTGGGCTTGTGATTGTTCGAGATCTTGACCTCTTCTCATA
CTGCCAGTCTTGTTTGCTTCCTTTTCAGGTTAAAGTTCATGTANGCTATG
TGCCATCTGGTCAACGAGTTTTGGGATTAAGCAAGTCTCCAGAGTTGCTG
AAGTCTTTTCAAACGACTCCAAAACCACAGCGTCTAACAGATGAAGTGTG
TCAGCTTTGCACATGGTATCAGCCGGGCAGTGTTG
back to top