EY659881 | Citrus Genome Database

Overview


Name	EY659881
Unique Name	EY659881
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	925

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3535	contig	Csv1_Contig3535:1..854.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALTY (Glucose-1-phosphate adenylyltransferase OS=Salmonella typhimurium GN=glgC PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALSV (Glucose-1-phosphate adenylyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALPK (Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALPC (Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALPB (Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALPA (Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi A GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALNS (Glucose-1-phosphate adenylyltransferase OS=Salmonella newport (strain SL254) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALHS (Glucose-1-phosphate adenylyltransferase OS=Salmonella heidelberg (strain SL476) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALEP (Glucose-1-phosphate adenylyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SALDC (Glucose-1-phosphate adenylyltransferase OS=Salmonella dublin (strain CT_02021853) GN=glgC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.732e-34
Identity = 76/174 (43.68%), Postives = 105/174 (60.34%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPMDEK 828
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+  K
Sbjct:    2 VSLEKNDRVMLARQLPLESVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVVCMPVPIK 173

HSP 2 Score: 28.4906 bits (62), Expect = 6.732e-34
Identity = 10/22 (45.45%), Postives = 17/22 (77.27%), Query Frame = 3

Query:  825 KRPTAFGLMKIDEEGRLLNFLE 890
            K  TAFG+M +DE  ++++F+E
Sbjct:  173 KEATAFGVMAVDESDKIIDFVE 194

The following BLAST results are available for this feature:

BLAST of EY659881 vs. ExPASy Swiss-Prot

BLAST of EY659881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307


Match Name	E-value	Identity	Description
GLGC_SALTY	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALSV	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALPK	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALPC	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALPB	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALPA	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALNS	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALHS	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALEP	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]
GLGC_SALDC	6.732e-34	43.68	Glucose-1-phosphate adenylyltransferase OS=Salmone...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-016-B05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY659881 ID=EY659881; Name=EY659881; organism=Citrus sinensis; type=EST; length=925bp
CAACAACACAGGCGTCCGACTCTCACTTTACANAATAACTCAGGCTCAGC
TCGCTTAACGATTACTGTTAACGTTAACAGATTGTACTCATTAATGGCGA
GTATGGCGTCGATCGGATCGCTCAAAGTTCCGTCATCTCCGTCAACTGCA
GCAACGTCGTCTAACTCCAACAATCACAGCCGCAGGAGTGTGGTTAAACG
ACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAAGATTTTTTCTAAAG
CTGTCACCGGTGATCGGCGAAGGGAGAGGCGTCCGATCGTTGTGTCTCCT
CAAGCGGTGTCGGATTCGAAAAATTCTCAGACTTGCCTTGATCCTGAAGC
CAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGGAGCAGGGACTCGCT
TGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTGTTCCATTGGGAGCT
AATTACAGGCTGATTGATATTCCTGTGAGCAATTGTTTGAATAGTAACAT
TTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGCGTCCCTGAATCGTC
ACCTATCGAGGGCGTATGCTAGCAACATGGGTGGTTACAAGAACGAAGGA
TTTGTTGAAGTTCTTGCTGCACAGCAGAGTCCAGAAGATCCCAATTGGTT
TCAGGGTACAGCTGATGCTGTGAGGCAGTATTTGTGGCTGTTTGAGGAGC
ACAATGTTCTGGGAATTCTCGTTCTTGCTGGTGATCATTTGTACCGAATG
GACTATGAGAGATTTATTCAGGCACACAGAGAAACTGATGCGGATATCAC
AGTANCTGCCCTGCCCATGGATGAAAAAGGCCTACTGCTTTTGGNCTGAT
GAAAATCGATGAAGAGGGACGCCTATTGAATTTTCTGGAGAACCAAAAGG
AGACACTTTAAGGTATGAAGGGTGA