EY659881 | Citrus Genome Database

Overview


Name	EY659881
Unique Name	EY659881
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	925

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig3535	contig	Csv1_Contig3535:1..854.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SHIBS (Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glgC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_SHIB3 (Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glgC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_ECOUT (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=glgC PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_ECOSM (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_ECOSE (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain SE11) GN=glgC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_ECOLU (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_ECOLI (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain K12) GN=glgC PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_ECOLC (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=glgC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_ECOL6 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O6 GN=glgC PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

BLAST of EY659881 vs. ExPASy Swiss-Prot
Match: GLGC_ECOL5 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.005e-32
Identity = 73/171 (42.69%), Postives = 103/171 (60.23%), Query Frame = 1

Query:  307 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPEDPNWFQGTADAVRQYLWLFEEHNVLGILVLAGDHLYRMDYERFIQAHRETDADITVXALPM 819
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADAV Q L +   +    +++LAGDH+Y+ DY R +  H E  A  TV  +P+
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPV 170

HSP 2 Score: 25.0238 bits (53), Expect = 6.005e-32
Identity = 8/19 (42.11%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  834 TAFGLMKIDEEGRLLNFLE 890
            +AFG+M +DE  +++ F+E
Sbjct:  176 SAFGVMAVDENDKIIEFVE 194

The following BLAST results are available for this feature:

BLAST of EY659881 vs. ExPASy Swiss-Prot

BLAST of EY659881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307


Match Name	E-value	Identity	Description
GLGC_SHIBS	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Shigell...	[more]
GLGC_SHIB3	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Shigell...	[more]
GLGC_ECOUT	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOSM	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOSE	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOLU	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOLI	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOLC	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOL6	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOL5	6.005e-32	42.69	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-016-B05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY659881 ID=EY659881; Name=EY659881; organism=Citrus sinensis; type=EST; length=925bp
CAACAACACAGGCGTCCGACTCTCACTTTACANAATAACTCAGGCTCAGC
TCGCTTAACGATTACTGTTAACGTTAACAGATTGTACTCATTAATGGCGA
GTATGGCGTCGATCGGATCGCTCAAAGTTCCGTCATCTCCGTCAACTGCA
GCAACGTCGTCTAACTCCAACAATCACAGCCGCAGGAGTGTGGTTAAACG
ACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAAGATTTTTTCTAAAG
CTGTCACCGGTGATCGGCGAAGGGAGAGGCGTCCGATCGTTGTGTCTCCT
CAAGCGGTGTCGGATTCGAAAAATTCTCAGACTTGCCTTGATCCTGAAGC
CAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGGAGCAGGGACTCGCT
TGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTGTTCCATTGGGAGCT
AATTACAGGCTGATTGATATTCCTGTGAGCAATTGTTTGAATAGTAACAT
TTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGCGTCCCTGAATCGTC
ACCTATCGAGGGCGTATGCTAGCAACATGGGTGGTTACAAGAACGAAGGA
TTTGTTGAAGTTCTTGCTGCACAGCAGAGTCCAGAAGATCCCAATTGGTT
TCAGGGTACAGCTGATGCTGTGAGGCAGTATTTGTGGCTGTTTGAGGAGC
ACAATGTTCTGGGAATTCTCGTTCTTGCTGGTGATCATTTGTACCGAATG
GACTATGAGAGATTTATTCAGGCACACAGAGAAACTGATGCGGATATCAC
AGTANCTGCCCTGCCCATGGATGAAAAAGGCCTACTGCTTTTGGNCTGAT
GAAAATCGATGAAGAGGGACGCCTATTGAATTTTCTGGAGAACCAAAAGG
AGACACTTTAAGGTATGAAGGGTGA