EY659870

Overview
NameEY659870
Unique NameEY659870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 2.185e-21
Identity = 52/95 (54.74%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI       +   +++D K+FKA+  L
Sbjct:   88 KKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASL 182          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.030e-20
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   54 APTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKP-TVELVKVTQDMKSFKAYDKL 329
            A TIG++VD RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  VE  +VT+D K FKA+  L
Sbjct:   90 AKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATL 182          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.199e-19
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  L
Sbjct:   88 KKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASL 182          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 2.045e-19
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  L
Sbjct:   88 KKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASL 182          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.045e-19
Identity = 48/95 (50.53%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI       +   ++++ K+FKA+  L
Sbjct:   88 KRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASL 182          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 2.671e-19
Identity = 48/95 (50.53%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+       +   +T++ K+FKA+  L
Sbjct:   88 KKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASL 182          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 7.772e-19
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            KK+A TIG+SVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI       +   +T++ K+FKA+  L
Sbjct:   88 KKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASL 182          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 2.261e-18
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I       +   +T++ K+FKA+  L
Sbjct:   88 KKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASL 182          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 2.500e-17
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 3
Query:   45 KKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            K++A TIG++VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI       +   +T++ K F A+  L
Sbjct:   88 KRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANL 182          
BLAST of EY659870 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.158e-16
Identity = 43/92 (46.74%), Postives = 62/92 (67.39%), Query Frame = 3
Query:   54 APTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKL 329
            A TIG++VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  L
Sbjct:   90 ARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYL 180          
The following BLAST results are available for this feature:
BLAST of EY659870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_DANRE2.185e-2154.7460S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_DROME7.030e-2052.6960S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_RAT1.199e-1951.5860S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE2.045e-1951.5860S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_CHICK2.045e-1950.5360S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_HUMAN2.671e-1950.5360S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN7.772e-1950.5360S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_CRIGR2.261e-1850.5360S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_ICTPU2.500e-1747.3760S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_SPOFR6.158e-1646.7460S ribosomal protein L13 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-016-A05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659870 ID=EY659870; Name=EY659870; organism=Citrus sinensis; type=EST; length=929bp
TTTCAAAACCACGCGTCCGAGGAACTCTTTGCGATAAGAATCCCAAGAAA
CTGGCTCCGACAATTGGTGTTTCAGTCGATCATCGACGCAAGAACCGTTC
TCTTGAGGGTCTTCAATCTAATGTTCAGAGGCTCAAGACTTACAAGGCTA
AGTTGGTTGTTTTCCCAAGACGTGCTCGCAAGTTCAAGGCTGGTGATTCT
GCCCCTGAGGAATTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCC
CATTGCTCCTGAGAAGCCTACTGTCGAGCTTGTTAAGGTTACTCAAGATA
TGAAGTCCTTCAAGGCTTATGACAAACTCCTTTTTATGAATAACGAATGT
TGGCTTCTTTTCTTTTCAGCATTATTATGGCAAATGATGAGATACAATGT
CCTGCAACTTCTGAAGAACTTGAGATTCCACTCCCATGGGAAGGAAATAA
CTGATGCTGATATTCTGCAATGGGCCAATGCCAAAGTGAGAATCTCAGGA
AGCCAGAGTCACATGAATAGTTTTAAGGATAAGAGTTTGGCAGATGGCAT
CTTTTTTCTTGAGCTACTCAGTGCTGTTCAGCCTAGAGCTGTAAATTGGA
GTCTTGTCACAAAAGGAGTAACGGGTATGTTTTCTTCTAATCATACGCGA
TGTGCGGTTACTTTGGTCGGCAATAGCAGCATGCTTTGGCAAAGAATTTA
GTTTTGACAGTACAATTTGGTTTTATTGTGTGTGATTTTATAATCTAACT
TTTTTCNTATATTCCTTTCGAATTTCATAAATNATGGTGGATAATACTCA
TTCGTTTTGACTTGTTCTTTCTCTTTCAAACTTGGGGAATTTAGATGAGG
AAAAAAAGATGATGCACCTACATATCAGTATTGCAGGAAACTTGGATGCT
CAATATTTTGCTCCCTGAAAACTACTGAG
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