EY659850

Overview
NameEY659850
Unique NameEY659850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659850_ssr241 microsatellite EY659850_ssr241:241..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.938e-30
Identity = 77/204 (37.75%), Postives = 111/204 (54.41%), Query Frame = 2
Query:  119 NGIXLFVLIYCXVXXSXVLGXX----VTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRD--ELDFEFLGNQTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR--VYKNSGKAPFPMNNPWGVYSTLWGADDWGT 700
            N + + +++   V    VLG      + F E     + + +L +    R  +L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    V+D  ELD EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+ ++H Y+ILW    I+F+VDDVPIR  + K      +P   P  +Y+T+W A  W T
Sbjct:   12 NRLVVIIMMVMMVSCRCVLGLENINPIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYP-QKPMSLYATIWDASSWAT 214          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.365e-27
Identity = 65/153 (42.48%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  185 VTFLEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGKAPFP 643
            VT+  ++  TW    L  +      QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P
Sbjct:   22 VTWGNNYYQTWGHQAL-VINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYP 171          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 50/154 (32.47%), Postives = 71/154 (46.10%), Query Frame = 2
Query:  263 LVLDQNSGCGFASKR-----QYLFGRVSMKIKLVPGDSAGTVTAF--YMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGKAPFPMNNPWGVYSTLW---GADDW 694
            L LD+  G  +  K      +  FG    ++++    + G V++F  Y   +  N  DE+D EFLG  T +   VQ N Y NG G  E   NL FD + D+H Y   W   +I FYVD    +VY+ +   P     P  +   LW   G D+W
Sbjct:   78 LTLDREYGGSYPYKSGEYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGK--KVYRGTRNIPV---TPGKIMMNLWPGIGVDEW 223          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 49/136 (36.03%), Postives = 69/136 (50.74%), Query Frame = 2
Query:  194 LEDFKVTWSDAHLRQLEGGRXXQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVD 595
            LEDF  T S     +   G     +  + +G    S R +L+G+ S+++K     S G VTAF +   T  + DE+DFE+LG   G   T Q+N Y+ G  D  R QR  +  D  A YH Y I W+   I++YVD
Sbjct:  148 LEDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTAR--SRGVVTAFDL---TSAIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVD 275          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.210e-11
Identity = 46/142 (32.39%), Postives = 68/142 (47.89%), Query Frame = 2
Query:  287 CG-FASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGKAPFPMNNPWGVYSTLW---GADDW 694
            CG + S   Y +G   + +K  P  + G V++F+  +   +    DE+D EFLG  T +   VQ N Y NG G  E+ +NL FD +  +H Y   W   +I +YVD     V K++     P + P  +   LW   G D W
Sbjct:   85 CGEYRSTNNYGYGLYEVSMK--PAKNTGIVSSFFTYTGPSHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDG----VLKHTATTNIP-STPGKIMMNLWNGTGVDSW 216          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 2
Query:  314 LFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVR--DELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGKAPFPMNNPWGVYSTLW---GADDW 694
            ++G    ++ + P  + G V++F+  +   +    DE+D EFLG  T +   VQ N Y NG G  E+ ++L FD +  +H Y   W   +I +YVD     V K++  A  P + P  +   LW   G DDW
Sbjct:   92 IYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP-STPGKIMMNLWNGTGVDDW 215          
BLAST of EY659850 vs. ExPASy Swiss-Prot
Match: GUB_BACLI (Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.887e-11
Identity = 44/131 (33.59%), Postives = 61/131 (46.56%), Query Frame = 2
Query:  317 FGRVSMKIKLVPGDSAGTVTAF--YMNSNTENVRDELDFEFLGNQTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGKAPFPMNNPWGVYSTLW---GADDW 694
            +G    ++ + P  + G V++F  Y         DE+D EFLG  T +   VQ N Y NG G+ E+ VNL FD A  YH Y   W  + I +YVD       K++     P   P  +   LW   G D+W
Sbjct:   99 YGYGLYEVNMKPAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIP-QTPGKIMMNLWNGAGVDEW 221          
The following BLAST results are available for this feature:
BLAST of EY659850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
XTH29_ARATH2.938e-3037.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH1.365e-2742.48Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_CLOTH1.050e-1132.47Beta-glucanase OS=Clostridium thermocellum (strain... [more]
CRR1_YEAST1.371e-1136.03Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]
GUB_PAEPO5.210e-1132.39Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
GUB_PAEMA8.887e-1131.82Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
GUB_BACLI8.887e-1133.59Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659850 ID=EY659850; Name=EY659850; organism=Citrus sinensis; type=EST; length=852bp
TTCTTCANTATGGGGGGGGNNNGNANATAATTTCCTATGAGAGGGGAGNT
NTNTTTNTAATTAGTAANAGATAATATTTTATTGTATTGCTCCTCTTTAA
GATATGGNTATNNTAAGAAATGGAATAGNATTATTTGTGTTGATTTACTG
TNTTGTATNNTGNTCTTGNGTTTTAGGGNGANCGGTTACTTTTCTTGAGG
ATTTTAAAGTNACATGGTCCGATGCCCATCTCAGGCAATTGGAGGGAGGG
AGGNCCNTCCAGCTAGTTCTAGACCAAAATTCAGGATGTGGGTTTGCTTC
CAAAAGGCAGTACTTGTTCGGGCGTGTAAGCATGAAGATCAAGCTCGTTC
CTGGAGACTCTGCTGGAACTGTCACTGCATTTTATATGAATTCCAACACC
GAAAATGTGAGAGACGAGCTTGATTTTGAGTTCCTGGGAAACCAAACGGG
TCAGCCTTACACGGTCCAGACCAATATCTATGCAAATGGAAAAGGCGATA
GAGAACAGAGAGTGAACCTCTGGTTTGACCCTGCTGCAGATTATCACCTT
TACACTATTCTCTGGAACCATCACCATATTGTCTTCTATGTGGATGATGT
GCCCATCAGGGTTTACAAAAACAGTGGAAAGGCTCCATTTCCAATGAACA
ACCCATGGGGGGTGTATTCNACGCTGTGGGGAGCAGATGACTGGGGAACA
GAAGTGGTCTTGAGAAATAGATTGGAGAAAGCTCCTTTTTTGGTTATTAA
AGAGATTTGGTATTNNNNNNNGGCCAGTTCTGGGACAGAAAATTTGGCTT
GAACCCAGGTAATTGGGGGAAGCAAATTATTTTAAGCCTTACCGGCCTGG
GA
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