EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659785_ssr438 microsatellite EY659785_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:1..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 4.779e-88
Identity = 151/204 (74.02%), Postives = 179/204 (87.75%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRET 835
            E+++W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+K MPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEV+TAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A V KK+L  AGIDD +TS+RG T TLGNF KA F+ + KTY +LTPD W+ET
Sbjct:   56 EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKET 259          

HSP 2 Score: 25.409 bits (54), Expect = 4.779e-88
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  838 FVKSPYQEYTDLL 876
            F KSPYQE+TD L
Sbjct:  261 FTKSPYQEFTDHL 273          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 4.903e-85
Identity = 149/199 (74.87%), Postives = 174/199 (87.44%), Query Frame = 2
Query:  239 VPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRET 835
            +PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+K MPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEV+TAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A V KK+L  AGIDD +TS+RG T TLGNF KA F+ + KTY +LTPD W+ET
Sbjct:    1 IPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKET 199          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 4.151e-84
Identity = 151/206 (73.30%), Postives = 174/206 (84.47%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRETRL 841
            E + W PVTKLGRLV  G + ++ +IYL SLPIKEYQIID  +   LKDEVMK +PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKC+KEV+TAI GAI+ AKLSVIPVRRGYWGNK+G PHTVP KVTGKCGSV VR+VPAPRG GIVAARV KK+LQ+AG+DDV+TSSRG T+T+GNFV A F  + KT+ +LTPD WRE +L
Sbjct:   45 ETKSWTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLN--LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKL 248          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 5.421e-84
Identity = 148/204 (72.55%), Postives = 178/204 (87.25%), Query Frame = 2
Query:  221 EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRE 832
            +EE++WVPVTKLGRLV+ GKI+S+E+IYL+SLPIKEYQI+D  +  +L DEVMK +PVQKQTRAGQRTRFKAFVV+GD+DGHVGLG+KC+KEV+TAIRGAII+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVR+VPAPRGAG+VAA V+K+ LQ AGI+D +T SRGSTKTLGNFVKA F     TYG LTP+ W E
Sbjct:   29 DEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLP-RLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAE 231          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.289e-81
Identity = 145/207 (70.05%), Postives = 173/207 (83.57%), Query Frame = 2
Query:  221 EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRETRL 841
            E+E +W PVTKLGRLV+E KI +LE+IYL+SLPIKE++IID L  + LKDEV+K  PVQKQT AGQRTRFKAFV +GD  GHVGLGVKCSKEV+TAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VR++PAPRG GIV+A V KK+L  AGI+D +T+++GST TLGNF KA +  L +TY +LTPD W+E  L
Sbjct:   52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSN-LKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEAL 257          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.170e-78
Identity = 140/205 (68.29%), Postives = 168/205 (81.95%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH-KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRET 835
            EE++WVP TKLGRLV+  K+ SLE+I+L S+PIKE+QI+DTLI   KL DE+MK  PVQK T AGQRTRFKAF VVGD DGH+G+G +  KEVS AIR ++I AKL+++PVRRGYWGNKIG PHT+P KVTGKCGSV VR+VPAPRG GIVAA V KK+L+FAG++DV+TSSRG T+T GN + A F  L KTYGFLTPD W +T
Sbjct:   41 EEKEWVPCTKLGRLVKAQKVTSLEEIFLFSMPIKEHQIVDTLIAEGKLHDEMMKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIVPVRRGYWGNKIGEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDVYTSSRGKTRTHGNLIMATFYALRKTYGFLTPDLWADT 245          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 6.008e-75
Identity = 136/206 (66.02%), Postives = 169/206 (82.04%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRETRL 841
            EE+ WVPVTKLGRLV+ GKI ++E+I+LHSLP+KE+QIIDTL+   L+DEVM   PVQKQTRAGQRTRFKA VVVGD++GHVGLG+K +KEV+ AIR  II+AKLSVIP+RRGYWG  +G+PH++  K TGKCGSVTVR++PAPRG+GIVA+   KK+LQ AG++DV+T S G T+TL N +KA F  +  TYGFLTP+ W E  L
Sbjct:   31 EEKGWVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPG-LQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQPL 235          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.486e-46
Identity = 94/200 (47.00%), Postives = 139/200 (69.50%), Query Frame = 2
Query:  233 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFW 826
            +W P T LGRLV EGKI+S+++++  ++PI+E +IIDTL+   LK EV+    VQ+QT +G+ ++++  V VG+ DG+VG+G+  S+++  AI  A   AKL+++PVRRG   W    G PH++P KV GK GSV + ++PAP+G G+VA+ V+K VL+ AGI DV++ S G T+T  N  KA +E L KTY F +PD W
Sbjct:    4 EWQPRTLLGRLVVEGKIKSIDEVFARNMPIREVEIIDTLLPG-LKSEVLSVGFVQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIVPVRRGCGSWECLCGEPHSIPFKVEGKAGSVKIELIPAPKGVGLVASDVAKTVLRLAGIKDVWSRSYGETRTTHNMAKAVYEALKKTYQFYSPDQW 202          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_HYPBU (30S ribosomal protein S5P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps5p PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 7.653e-46
Identity = 100/207 (48.31%), Postives = 138/207 (66.67%), Query Frame = 2
Query:  221 EEEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRET 835
            E E++W P T +GRLV+EG+IRSL +I+  +LPI E +I+D LIG +LK E +    VQK T AG+  RF+  VV+G+ +G VG+G   +++++ AI  AI  AKL++IPVRR  G W      PH+VP  V GK GSV V + PAPRG G+VA   +K VL+ AGI DV++ ++G T+T  NFVKA +  L +TY F+TP  W  T
Sbjct:    7 ELEQEWQPRTYVGRLVKEGRIRSLSEIFEKNLPILEPEIVDYLIGPELKSETVDVRLVQKMTDAGRINRFRVVVVIGNENGFVGVGQGKARQLAVAIEKAIRNAKLNIIPVRRGCGSWECLCSEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDAAKVVLRLAGIRDVWSFTKGDTRTTINFVKATYNALKQTYKFVTPLDWART 213          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.227e-45
Identity = 102/206 (49.51%), Postives = 137/206 (66.50%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRETRL 841
            E W P T++GRLV+EGKI+S+++I+  +LPI E +I+D L+   L  EV+    VQK T AG+ TRF+A VVVG+ DG+VGLG   +++   AI  AI  AKL++IPVRRG   W    G  H+VP  V GK GSV V + PAP+G G+VA  V+K VL+ AGI DV+T ++G T+T  NF +A +  L  TY F+TP  W E RL
Sbjct:   12 EAWQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLLPG-LDHEVIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWTFTKGETRTSYNFARATYLALRNTYRFVTPADWAEARL 216          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS2_BOVIN4.779e-8874.0240S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]
RS2_CRIGR4.903e-8574.8740S ribosomal protein S2 (Fragment) OS=Cricetulus ... [more]
RS2_DICDI4.151e-8473.3040S ribosomal protein S2 OS=Dictyostelium discoide... [more]
RS2_SCHPO5.421e-8472.5540S ribosomal protein S2 OS=Schizosaccharomyces po... [more]
RS2_CAEEL3.289e-8170.0540S ribosomal protein S2 OS=Caenorhabditis elegans... [more]
RS2_LEIAM1.170e-7868.2940S ribosomal protein S2 OS=Leishmania amazonensis... [more]
RS2_YEAST6.008e-7566.0240S ribosomal protein S2 OS=Saccharomyces cerevisi... [more]
RS5_THEPD4.486e-4647.0030S ribosomal protein S5P OS=Thermofilum pendens (... [more]
RS5_HYPBU7.653e-4648.3130S ribosomal protein S5P OS=Hyperthermus butylicu... [more]
RS5_AERPE2.227e-4549.5130S ribosomal protein S5P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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