EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_LYSSC (30S ribosomal protein S5 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 53/144 (36.81%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK +++ V R      +G   T P  V G+ G+  + + PA  G G++A    + VL+ AGI D+ + S GS   + N V+A  + L
Sbjct:   11 ELEERVVTINRVAKVVKGGRRFRFTALVVVGDRNGHVGFGTGKAQEVPDAIRKAVEDAKKNLVEVPR------VG--GTTPHLVLGRFGAGEILIKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATVQGL 145          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_HYDS0 (30S ribosomal protein S5 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 54/157 (34.39%), Postives = 82/157 (52.23%), Query Frame = 2
Query:  332 QIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            Q I TL   + ++ ++++    + T+ G+R  F A VV+GD  G+VG G+  ++EV  +I  AI  AK   I  P+  G          T+P  V G+ GS  +   PA RG G++A   +K + + AG  DV T   GS+    N V+A F+ LLK
Sbjct:   17 QGITTLDDIQFEERLLEAARTTRVTKGGKRFSFSALVVIGDKRGYVGFGLGKAREVPLSIAKAIEDAKKKTIRVPIVNG----------TIPHDVVGEYGSARIIAFPARRGTGVIAGGAAKPIFELAGYTDVLTKVVGSSNH-HNVVRAVFDALLK 162          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_CALS8 (30S ribosomal protein S5 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 55/143 (38.46%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            LK+ V+    V K  + G+R +F A VVVGD +GHVG G   + E+  AIR AI  AK  +I V        +G   T+P +  G  G+  V + PAP G G++A    + V + AGI D+ T S GS     N V A  E L
Sbjct:   13 LKERVVNINRVAKVVKGGKRLKFSAIVVVGDENGHVGAGHGKAAEIPDAIRKAIEDAKKHLIEV------PIVGT--TIPHEAIGDFGASKVLIKPAPEGTGVIAGGAVRAVCELAGIKDIRTKSLGSNNP-ANVVHATIEAL 146          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACSU (30S ribosomal protein S5 OS=Bacillus subtilis GN=rpsE PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ ++    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  + + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A  + L
Sbjct:   10 ELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPI-NMIRATLQGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACP2 (30S ribosomal protein S5 OS=Bacillus pumilus (strain SAFR-032) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 50/144 (34.72%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ ++    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  V + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A  + L
Sbjct:   10 ELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNVLLKPASEGTGVIAGGPVRAVLELAGLADILSKSLGSNTPI-NMIRATLQGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BACA2 (30S ribosomal protein S5 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +L++ ++    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  AK ++I V        +G   T+P ++ G+ G+  + + PA  G G++A    + VL+ AG+ D+ + S GS   + N ++A  + L
Sbjct:   12 ELEERLVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEV------PMVGT--TIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLGSNTPI-NMIRATLQGL 146          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_PELPB (30S ribosomal protein S5 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.033e-14
Identity = 53/140 (37.86%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA 775
            LK++++      K  + G+R  F A VVVGD +GHVG G+  + EV  AI   I   K +VI  P+ +G          T+P ++  K GS  V M PA  G G++A    + VL+ AGI D+ T S GS+    N VKA
Sbjct:   16 LKEKLVHINRTAKVVKGGKRFGFNAIVVVGDKEGHVGYGLGKANEVQDAIAKGIEDGKKNVIKVPIVKG----------TIPHQIVAKFGSAKVMMKPATPGTGLIAGGAVRAVLEMAGIHDILTKSLGSSNP-HNVVKA 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_VEREI (30S ribosomal protein S5 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 49/144 (34.03%), Postives = 77/144 (53.47%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLL 793
            L+++++    V K  + G+   F A  VVGD DG VG+G   SKEV  A++ A+  A+ +++ V          +  T+   VTG  G+  V M PAP+GAGI+A    + V +  G+ D+   S GS+    N V+A F+ L+
Sbjct:   17 LREKMIAVNRVTKVVKGGRILGFAALTVVGDGDGRVGMGKGKSKEVPAAVQKAMEEARRNMVKVSL--------KNGTIHHNVTGHHGAAVVMMAPAPKGAGIIAGGPMRAVFEVLGVTDIVAKSHGSSNPY-NMVRATFDALV 151          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_STAHJ (30S ribosomal protein S5 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 52/144 (36.11%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + ++ V+    V K  + G+R RF A VVVGD +G VG G   ++EV  AI+ A+  AK  ++ V R           T P  +TG+ GS +V M PA  G G++A    + VL+ AGI D+ + S GS   + N V+A    L
Sbjct:   10 EFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAIKKAVEAAKKDLVVVPR--------VEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGITDILSKSLGSNTPI-NMVRATINGL 144          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_MYCMS (30S ribosomal protein S5 OS=Mycoplasma mycoides subsp. mycoides SC GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            + +++V+    V K T+ G+  RF A VVVG+  G VG+G   + EV  AI+ AI  AK +++ V          R  TVP +V G  G+  + + PA  G GI+A   ++ V++ AGI DV+  S GS   + N ++A FE L
Sbjct:   47 EFEEKVVTIRRVTKVTKGGRHFRFAAVVVVGNKKGLVGMGTGKANEVPEAIKKAIKEAKKNLVSVTL--------RNTTVPHEVLGTFGAGKILIKPAKVGTGIIAGGPARAVIELAGISDVYAKSLGSNNAI-NMIRATFEGL 181          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_LYSSC1.556e-1436.8130S ribosomal protein S5 OS=Lysinibacillus sphaeri... [more]
RS5_HYDS01.556e-1434.3930S ribosomal protein S5 OS=Hydrogenobaculum sp. (... [more]
RS5_CALS81.556e-1438.4630S ribosomal protein S5 OS=Caldicellulosiruptor s... [more]
RS5_BACSU1.556e-1434.0330S ribosomal protein S5 OS=Bacillus subtilis GN=r... [more]
RS5_BACP21.556e-1434.7230S ribosomal protein S5 OS=Bacillus pumilus (stra... [more]
RS5_BACA21.556e-1434.0330S ribosomal protein S5 OS=Bacillus amyloliquefac... [more]
RS5_PELPB2.033e-1437.8630S ribosomal protein S5 OS=Pelodictyon phaeoclath... [more]
RS5_VEREI2.655e-1434.0330S ribosomal protein S5 OS=Verminephrobacter eise... [more]
RS5_STAHJ2.655e-1436.1130S ribosomal protein S5 OS=Staphylococcus haemoly... [more]
RS5_MYCMS2.655e-1436.1130S ribosomal protein S5 OS=Mycoplasma mycoides su... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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