EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659785_ssr438 microsatellite EY659785_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:1..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.798e-45
Identity = 99/201 (49.25%), Postives = 135/201 (67.16%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFW 826
            E+WVP T++GR+V+EGKI S+ +++  +LPI E +I+D L+   LK EV+    VQK T AG+ TR +  VV+G+ DG VGLG+  +K++  AI+ A+  AKL++ PVRRG   W    G PH+VP  V GK GSV V + PAPRG G+VA  V+K VL++AGI DV+T + G T+T  NF KA F  L +TY FL P  W
Sbjct:    8 EEWVPRTRVGRMVKEGKITSIYELFEKNLPILEPEIVDYLVPD-LKHEVLDVSLVQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDVAKAVLRYAGIKDVWTHTEGETRTTHNFAKATFNALKQTYKFLAPWDW 207          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 4.199e-44
Identity = 92/205 (44.88%), Postives = 137/205 (66.83%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRETR 838
            E+W P T +G LV+EGKI S+++++  +LPI E +I+D L+  KLK EV+    VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK+++IPVRRG   W    G PH++P KV GK GSV V ++PAP+G G+V   V K +L +AGI D +++++G T+T  NFV+A +  L  TY F+T   W   R
Sbjct:   11 EEWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENFVRAGYSALYNTYKFVTLQDWVRKR 214          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.484e-44
Identity = 90/205 (43.90%), Postives = 136/205 (66.34%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRETR 838
            E+W P T +G LV+ GKI S+++++  +LPI E +I+D L+  KLK EV+    VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK++++PVRRG   W    G PH++P KV GK GSV V ++PAP+G G+V   V K +L +AGI D +++++G T+T  NFV+A +  L  TY F+T   W   R
Sbjct:   11 EEWKPRTSIGNLVKNGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNILPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVNLLPAPKGTGLVVGSVLKTLLTYAGIRDAWSTTKGETRTTENFVRAGYSALYNTYNFVTLQDWARKR 214          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.222e-43
Identity = 96/205 (46.83%), Postives = 136/205 (66.34%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRETR 838
            E+W P TK+G+LV+EGKI S++++Y  ++ I E +IID L+ + +K EV+    VQKQT AG+ +R+K  VV+G+ DG+V +GV  SK++  AI+ AI  AK+ VIPVRRG   W    G  H++P  V+GK GS  V + PAP+G G+VA  V K +L +AGI DV++ SRG T+T  NF+ A +  L  TY F+TP  W   R
Sbjct:   11 EEWKPRTKIGQLVKEGKITSIKELYARNMSIAEPEIIDVLLPN-MKYEVIDIGMVQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLPFLVSGKSGSAEVVLRPAPKGTGLVAGGVLKTLLTYAGIKDVWSFSRGETRTTDNFIMAGYRALYNTYKFVTPVDWARRR 214          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_SULTO (30S ribosomal protein S5P OS=Sulfolobus tokodaii GN=rps5p PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.084e-43
Identity = 93/201 (46.27%), Postives = 134/201 (66.67%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFW 826
            E+W P TK+G+LV+EGKI S+++I+  + PI E +I+D L+  KLK EVM    VQKQT AG+ +++K  +V+G+ DG+V  G   +K++  AI+ AI  AK+++IPVRRG   W    G  H++P KV GK GSV V ++PAP+G G+V     K +L +AGI D ++ +RGST T  NF+KA +  L  TY F+TP  W
Sbjct:   11 EEWKPRTKVGQLVKEGKITSMKEIFEKNYPITEPEIVDVLLP-KLKYEVMDIKIVQKQTDAGEISKYKVLIVMGNMDGYVSYGTGKAKQLRVAIQKAIKNAKMNIIPVRRGCGSWECTCGEAHSLPFKVYGKAGSVEVLLMPAPKGTGLVVGPALKTLLTYAGIKDAWSLTRGSTYTTENFIKAGYNALYNTYKFVTPVDW 210          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.064e-43
Identity = 94/193 (48.70%), Postives = 131/193 (67.88%), Query Frame = 2
Query:  236 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGF 808
            W P T LGR+V+EGKIR++++I+ ++L IKE +I+D L+   LK E++    VQ+QT AG+R +F+A V VG+ DG+VG+G+  S++V  AI  A   AKL++ PVRRG   W      PH+VP  V+GK GSV V ++PAP+G G+VA  V+K VL+ AGI DV+T +RG T+T  NF  A F  L  TY F
Sbjct:    9 WEPKTALGRMVKEGKIRTIDEIFANNLLIKEPEIVDILLPG-LKQELLNLNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVPFVVSGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTKTRGDTRTTLNFALAVFNALRNTYYF 200          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.351e-42
Identity = 91/194 (46.91%), Postives = 130/194 (67.01%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            EEE+W+P T+LGRLV EG++ + E+     LPIKE+QIID L+   L+DEV+    VQ+ T +G+R +F+  V+VG+ DG++G+G     +V  AI+  I  AKL+V+ + RG   W    G+ HTVP KV+G  GSV + ++PAPRG G+ A  V+KKV++ AGI DV+T + GST+T  NF KA +  LL T
Sbjct:    6 EEEEWIPKTRLGRLVYEGQVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVVRINRGCGSWECGCGQAHTVPYKVSGSSGSVRIYLMPAPRGLGLAAGDVAKKVMEMAGIKDVWTRTEGSTRTTLNFAKATYNALLNT 198          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.764e-42
Identity = 92/193 (47.67%), Postives = 131/193 (67.88%), Query Frame = 2
Query:  236 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGF 808
            W P T+LGRLV+EGKIR++++I+ ++  IKE +I+D L+   LK E++    VQ+QT AG+R++F+  V VG+ DG+VG+G+  +K+V  AI  A+  AKL++ PVRRG   W      PH+VP  V GK GSV V ++PAP+G G+VA  V+K VL+ AGI DV+T +RG T+T  NF  A +  L  TY F
Sbjct:    9 WEPRTELGRLVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQEILNINVVQRQTHAGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTQTRGDTRTTLNFAMAVYNALRNTYYF 200          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.304e-42
Identity = 90/194 (46.39%), Postives = 133/194 (68.56%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSS-----RGSTKTLGNFVKANFECL 790
            E+W P TKLGR+V+EG+I+++++++     I E +I+D L+   L++EV+    VQK  ++G+R RF+  VVVG+ DG VG+G   ++EV  AIR AI  AKL++I VRRG   W    GRPH++P ++TGKCGSV + + PAPRG G+VA   ++KVL+ AGI+DV+T +     +G T+T  NF KA F+ L
Sbjct:    8 EEWEPKTKLGRMVKEGEIKTIDEVFAQGWKILEPEIVDWLLPD-LEEEVLDVNMVQKMHKSGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKVRRGCGSWECGCGRPHSIPFEITGKCGSVRITLKPAPRGTGLVAGETAQKVLEMAGIEDVWTKTTGGKGKGETRTTINFAKATFDAL 200          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 5.133e-42
Identity = 90/193 (46.63%), Postives = 132/193 (68.39%), Query Frame = 2
Query:  236 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGF 808
            W P T+LGR+V+EGKIR++++++ ++  IKE +I+D L+   LK E++    VQ+QT AG+R+ F+A V VG+ DG+VG+G+  +++V  AI  A+  AKL++IPVRRG   W      PH+VP  V GK GSV V ++PAP+G G+VA  V+K VL+ AG+ DV+T +RG T+T  NF  A +  L  TY F
Sbjct:    9 WEPRTELGRMVKEGKIRTIDEVFANNYIIKEPEIVDILVPG-LKQELLNVNIVQRQTHAGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVPFVVKGKSGSVEVTLIPAPKGVGLVAGDVAKAVLRLAGVKDVWTHTRGDTRTTLNFALAVYNALRNTYYF 200          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_IGNH43.798e-4549.2530S ribosomal protein S5P OS=Ignicoccus hospitalis... [more]
RS5_SULSO4.199e-4444.8830S ribosomal protein S5P OS=Sulfolobus solfataric... [more]
RS5_SULIN5.484e-4443.9030S ribosomal protein S5P OS=Sulfolobus islandicus... [more]
RS5_METS51.222e-4346.8330S ribosomal protein S5P OS=Metallosphaera sedula... [more]
RS5_SULTO2.084e-4346.2730S ribosomal protein S5P OS=Sulfolobus tokodaii G... [more]
RS5_PYRCJ6.064e-4348.7030S ribosomal protein S5P OS=Pyrobaculum calidifon... [more]
RS5_METTP1.351e-4246.9130S ribosomal protein S5P OS=Methanosaeta thermoph... [more]
RS5_PYRIL1.764e-4247.6730S ribosomal protein S5P OS=Pyrobaculum islandicu... [more]
RS5_METKA2.304e-4246.3930S ribosomal protein S5P OS=Methanopyrus kandleri... [more]
RS5_PYRAR5.133e-4246.6330S ribosomal protein S5P OS=Pyrobaculum arsenatic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
back to top