EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659785_ssr438 microsatellite EY659785_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:1..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BURA4 (30S ribosomal protein S5 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.993e-11
Identity = 45/147 (30.61%), Postives = 75/147 (51.02%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+++++    V K  + G+   F A  VVGD DG +G+G   +KEV  A++ A+  A+ ++  +P++ G          T+  +V GK G+  V + PA  G G++A    + V    G+ +V   S GST    N V+A  + L K
Sbjct:   17 LREKMISVNRVTKVVKGGRILGFAALTVVGDGDGRIGMGKGKAKEVPVAVQKAMEQARRNMFKVPLKNG----------TLQHEVHGKHGASAVLLAPAKAGTGVIAGGPMRAVFDVMGVQNVVAKSHGSTNPY-NLVRATLDGLRK 152          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BIFLO (30S ribosomal protein S5 OS=Bifidobacterium longum GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.993e-11
Identity = 53/148 (35.81%), Postives = 73/148 (49.32%), Query Frame = 2
Query:  353 GHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            G +L D V+    V K  + G+   F A VVVGD +G VG+G   S+EV  AI    + AK  +  +P  RG          T+   V G   + TV + PA  G G++A    + V++ AGI DV T S GS  T  N V+A  + L
Sbjct:   42 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPRVRG----------TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSA-TAVNVVRATVDAL 178          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BIFLI (30S ribosomal protein S5 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.993e-11
Identity = 53/148 (35.81%), Postives = 73/148 (49.32%), Query Frame = 2
Query:  353 GHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            G +L D V+    V K  + G+   F A VVVGD +G VG+G   S+EV  AI    + AK  +  +P  RG          T+   V G   + TV + PA  G G++A    + V++ AGI DV T S GS  T  N V+A  + L
Sbjct:   52 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPRVRG----------TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSA-TAVNVVRATVDAL 188          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_BIFLD (30S ribosomal protein S5 OS=Bifidobacterium longum (strain DJO10A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.993e-11
Identity = 53/148 (35.81%), Postives = 73/148 (49.32%), Query Frame = 2
Query:  353 GHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            G +L D V+    V K  + G+   F A VVVGD +G VG+G   S+EV  AI    + AK  +  +P  RG          T+   V G   + TV + PA  G G++A    + V++ AGI DV T S GS  T  N V+A  + L
Sbjct:   52 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDAKKHMFSVPRVRG----------TITHPVQGHDAAGTVLLRPAAPGTGVIAGGSVRAVMECAGITDVLTKSMGSA-TAVNVVRATVDAL 188          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RR5_CYAPA (30S ribosomal protein S5, cyanelle OS=Cyanophora paradoxa GN=rps5 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.993e-11
Identity = 43/153 (28.10%), Postives = 75/153 (49.02%), Query Frame = 2
Query:  365 KDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKA-NFECLLKTYGFLTPD 820
            ++ V++   V K  + G++  F+A VV+G+  G VG+G+  + +V  A++ A    K  V+ V        + R +++P  + G  G+  V M P+  G G++A    + VL+ AG+ ++     GS   L N   A N    LKT+     D
Sbjct:   18 QERVVQIRRVSKVVKGGKKLSFRAIVVIGNERGQVGVGIGKASDVINAVKKAAADGKKHVVEV-------PLTRSNSIPHPIDGIGGAARVIMRPSAEGTGVIAGGAVRTVLELAGVRNILAKQLGSNNPLNNARAAMNALSRLKTFSQFAKD 163          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_BURA47.993e-1130.6130S ribosomal protein S5 OS=Burkholderia ambifaria... [more]
RS5_BIFLO7.993e-1135.8130S ribosomal protein S5 OS=Bifidobacterium longum... [more]
RS5_BIFLI7.993e-1135.8130S ribosomal protein S5 OS=Bifidobacterium longum... [more]
RS5_BIFLD7.993e-1135.8130S ribosomal protein S5 OS=Bifidobacterium longum... [more]
RR5_CYAPA7.993e-1128.1030S ribosomal protein S5, cyanelle OS=Cyanophora p... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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