EY659785

Overview
NameEY659785
Unique NameEY659785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length944
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659785_ssr438 microsatellite EY659785_ssr438:438..449. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7505 contig Csv1_Contig7505:1..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.209e-36
Identity = 83/189 (43.92%), Postives = 117/189 (61.90%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            E W P T+LGR V++G+I  ++QI    LPI E +I+D L+   L++EVM    VQ+  ++G++  F+  V VG+ +G+VGLG   S+EV  AIR A+  AK ++I VRRG   WG   GR HTVP K+ GK  SV+  ++PAP G G+    V K +L  AGI DV++   G T+T  NF  A F+ L
Sbjct:   20 ENWEPKTELGRKVKDGEITDIDQILDKGLPIMELEIVDALLPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAPAGVGLAIGNVGKTILSLAGIADVWSMCSGQTQTTINFAGAVFDAL 207          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.209e-36
Identity = 86/198 (43.43%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL--LKTYGFL 811
            + W P T++G+ V+EG I  ++ I  + LP+ E +I+D L+   L+++V+    VQ+  ++G+R RF+A  VVG+ +G VG+G+  SKEV  AIR AI  AKLS+I VR G   W    G  H++P    G CGSV V ++PAPRG G+VA  V+K VL  AGI D++T + G T+T  NF  A F+ L  L   G+L
Sbjct:   11 DAWEPKTQVGKKVKEGTITDIDYIIDNGLPLLEPEIVDALLPD-LEEQVLDVSLVQRMHKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRTGCGSWECGCGTAHSIPFAAKGSCGSVKVELLPAPRGVGLVAGNVAKAVLGLAGIKDIWTKTFGDTRTTYNFAIATFDSLNNLNFVGYL 207          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.497e-36
Identity = 81/194 (41.75%), Postives = 123/194 (63.40%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKT 799
            E+ +W PVT LG+ V  G+I+S++Q+     PIKE +I+D  +   L+DEV+    +Q+ T +G+R +F+A V+VG+ +G++G G     +V  AI+ AI  AK++++ VRRG   W       H++P +V G  GSV V + PAP+G G+V   +SKKVL+ AGI D +T +RG T+T  NF KA F  L +T
Sbjct:    4 EKAEWRPVTGLGKQVASGEIKSIDQVLESGRPIKEPEIVDMFLPD-LEDEVLDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAKATFNALKET 196          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.768e-34
Identity = 88/204 (43.14%), Postives = 122/204 (59.80%), Query Frame = 2
Query:  230 EKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPV-------------QKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            E+W P TKLGRLV+EGKI ++++I  +   I+E +I+D L+ + L+ E MK   +             QK+T  G +TR++   +VGD DGHVG+G+  S ++  A   AI  AKL++I V RG   W    G PH++P +V GK GSV V + PAP+G GIVA    KK+ + AGI DV+  S G TKT  N V A F+ L K
Sbjct:    5 EEWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHVFAVFDALKK 207          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.955e-33
Identity = 78/203 (38.42%), Postives = 122/203 (60.10%), Query Frame = 2
Query:  236 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVI--PVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTPDFWRETR 838
            W P T+LGR V +G+I S++      LP+KE +++D L+   L+DEV+    VQ+ T +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +AKL++I  P+  G W ++ G  +++  + TGK GSV V + PAPRG G+ AA   + VL+ AG++D +T   G+T+T  N  KA +  L       TP+  R+ R
Sbjct:    5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAKATYNALRNASESRTPEHTRQVR 206          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.703e-33
Identity = 82/195 (42.05%), Postives = 119/195 (61.03%), Query Frame = 2
Query:  224 EEEKWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTY 802
            EE  WVP T LG+ V  G+I SLE+I      I+E  II  L+   LK EV+    +QK T  GQ TRFKA V  G+ +G++G+G   +K++  AI  A   A L+V P++ G   W  +  + H+VP KV GK GSV + ++PAPRG G+VA    +++L+ AG+ D +T+++GST T  +  KA  ECL +T+
Sbjct:   23 EEAPWVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVLECLRQTF 216          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.816e-32
Identity = 74/196 (37.76%), Postives = 117/196 (59.69%), Query Frame = 2
Query:  236 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLKTYGFLTP 817
            W P T+LGR+V++G + S+EQ     LP+KE +++D L+   L DEV+    VQ+ T +G+R +F+  V +G+ +G +G       +V +AI+ AI +AKL++I V RG   W +  G  +++     GK GSVTV ++PAP+G G+ AA     +L+ AG++D +T S G+T+T  N  KA +  L       TP
Sbjct:   11 WTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVNLAKATYNALRNASQSRTP 205          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.748e-17
Identity = 57/145 (39.31%), Postives = 84/145 (57.93%), Query Frame = 2
Query:  362 LKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            L+D V+    V K  + G+R RF A V+VGD +GHVG G   ++EV  AIR A+  AK ++I V       K+G   T+P +V G+ G+  V + PA  G+GI A    + V++ AGIDDV + + GS KT  N ++A  + L +
Sbjct:   11 LEDRVVSINRVTKVVKGGRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINV------PKVGT--TLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLGS-KTAINVIRATIDGLTR 146          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_GRAFK (30S ribosomal protein S5 OS=Gramella forsetii (strain KT0803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.836e-16
Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  353 GHKLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSV--IPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECLLK 796
            G +LKD ++    V K T+ G+   F A VVVGD +G VG G+  SKEV+ AI  A+  AK ++  IP+ +G          T+P +  GK G   V ++PA  G GI+A    + VL+  G+ DV + ++GS+    N VKA F+ LL+
Sbjct:   15 GLELKDRLVGVQRVTKVTKGGRAFGFSAIVVVGDENGVVGQGLGKSKEVADAISKAVEDAKKNLVRIPLHKG----------TLPHEQKGKYGGARVMLLPAAAGTGIIAGGAIRAVLESVGVHDVLSKNQGSSNP-HNVVKATFDALLQ 153          
BLAST of EY659785 vs. ExPASy Swiss-Prot
Match: RS5_PEDPA (30S ribosomal protein S5 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsE PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.704e-16
Identity = 57/144 (39.58%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  359 KLKDEVMKSMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVSTAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFAGIDDVFTSSRGSTKTLGNFVKANFECL 790
            +++D V+    V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  A+ S+I V        +G   T+P +  G  G   + M PA  G+G+ A    + V++ AGIDDV TS R  + T  N V+A FE L
Sbjct:   11 EIEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVETARKSLIEV------PIVGT--TLPHEAVGVYGGGRILMKPALEGSGVAAGGAVRAVMELAGIDDV-TSKRLGSNTAVNVVRATFEGL 145          
The following BLAST results are available for this feature:
BLAST of EY659785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 385
Match NameE-valueIdentityDescription
RS5_METST4.209e-3643.9230S ribosomal protein S5P OS=Methanosphaera stadtm... [more]
RS5_META34.209e-3643.4330S ribosomal protein S5P OS=Methanococcus aeolicu... [more]
RS5_METB65.497e-3641.7530S ribosomal protein S5P OS=Methanoregula boonei ... [more]
RS5_NANEQ1.768e-3443.1430S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_NATPD1.955e-3338.4230S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_CENSY9.703e-3342.0530S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]
RS5_HALWD4.816e-3237.7630S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_LACSS9.748e-1739.3130S ribosomal protein S5 OS=Lactobacillus sakei su... [more]
RS5_GRAFK2.836e-1638.0030S ribosomal protein S5 OS=Gramella forsetii (str... [more]
RS5_PEDPA3.704e-1639.5830S ribosomal protein S5 OS=Pediococcus pentosaceu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-015-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659785 ID=EY659785; Name=EY659785; organism=Citrus sinensis; type=EST; length=944bp
CCATTGATGATCGTTTAAACGGNNCGGAATTTTTCAACAAGGGGGCGGGN
GNGNNTTTTTCCCAACACGAAGGGGAAAGGNTAGCTTCAAACCCTAAACA
CACAAGAACAAAACTTTGGCCCAAAAAAGAGTGGAGCGCGGTGCATTCGG
ACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGGCC
GTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCACG
AAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAAAT
CTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCTTA
TCGGCCACAAATTGAAGGACGAGGTCATGAAGAGCATGCCGGTGCAGAAA
CAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTCGG
TGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGTTT
CCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTCCG
GTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTGCC
GTGTAAGGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCCGG
CCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTTCAAAGAAGGTGCTG
CAGTTTGCTGGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACCAA
GACTCTTGGAAACTTTGTCAAGGCAAACTTTGAGTGTTTGTTGAAGACAT
ATGGCTTCCTTACACCTGATTTCTGGAGGGAGACTCGTTTGTGAAATCTC
CATACCAAGAGTACACAGATCTTTTGACGCCAAAGCCCATCAGCAAGGCA
GTCATCACAGAAGTTGATCAAGGTGAACCTTAAGCTACTAAAGG
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